Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq5589 389 1e-105
seq18384 73.4 1e-10
seq7953 73.4 1e-10
>seq5589
Length=602
Score = 389 bits (430), Expect = 1e-105
Identities = 353/438 (81%), Gaps = 35/438 (8%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||||||||| || |||||||| ||||| |||| ||||||||||||||||| | |||
Sbjct 442 CCACAGGTCATCCC-CTAACTTTG-CAACGTTAGTGGGTTCGGTCCTCCAGTTGAT-GTT 386
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|| ||||||| |||||||||||| || |||||| |||||||| |||||||| || ||
Sbjct 385 ACTCAACCTT-CAACCTGCCCAT-GGCTAGATCACCCGGTTT-CGGGTCTACA-CCTTGC 330
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188
||||||||||| ||||||||| ||| | ||||| ||||||||| ||||||| || |
Sbjct 329 AACTAGACGCCCAGTTAAGACTCGGTTTCC-CTACGGCTCCCCTATACGGTTAACCTC-G 272
Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAA-------------------------AA 223
| || || ||||||||||||||||||||||| ||
Sbjct 271 CTACAAAATGTAAGTCGCTGACCCATTATACAATACGCAGTCATGACCCATTATACAAAA 212
Query 224 GGTACGCAGTCACCCAACAAAGTGG-GCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282
||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
Sbjct 211 GGTACGCAGTCACGGTCTCAAGTACCGCTCCCACTGCTTGTACGTATACGGTTTCAGGTT 152
Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 151 CTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTAT 92
Query 343 CGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT 402
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 91 CGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATATCA 32
Query 403 CGTGCTCCGTCCTACTCG 420
|||| ||| ||||||||
Sbjct 31 CGTGTCCCGCCCTACTCG 14
>seq18384
Length=957298
Score = 73.4 bits (80), Expect = 1e-10
Identities = 81/104 (78%), Gaps = 7/104 (7%)
Strand=Plus/Minus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | || || |||| | ||| | ||||||||| ||||||||||||||
Sbjct 33746 ACGGTTTCACGCCCTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 33688
Query 330 ACTAGTTCACTATCGGTCAGTCAGT---AGTATTTAGCCTTGGA 370
||| ||| |||||||||| || || ||||||||||||| ||
Sbjct 33687 ACTTGTTGACTATCGGTC--TC-GTGCCAGTATTTAGCCTTAGA 33647
>seq7953
Length=6969
Score = 73.4 bits (80), Expect = 1e-10
Identities = 81/104 (78%), Gaps = 7/104 (7%)
Strand=Plus/Plus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | || || |||| | ||| | ||||||||| ||||||||||||||
Sbjct 5205 ACGGTTTCACGCCCTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 5263
Query 330 ACTAGTTCACTATCGGTCAGTCAGT---AGTATTTAGCCTTGGA 370
||| ||| |||||||||| || || ||||||||||||| ||
Sbjct 5264 ACTTGTTGACTATCGGTC--TC-GTGCCAGTATTTAGCCTTAGA 5304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1239561628032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |