Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5589 389 1e-105 seq18384 73.4 1e-10 seq7953 73.4 1e-10 >seq5589 Length=602 Score = 389 bits (430), Expect = 1e-105 Identities = 353/438 (81%), Gaps = 35/438 (8%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || |||||||| ||||| |||| ||||||||||||||||| | ||| Sbjct 442 CCACAGGTCATCCC-CTAACTTTG-CAACGTTAGTGGGTTCGGTCCTCCAGTTGAT-GTT 386 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || ||||||| |||||||||||| || |||||| |||||||| |||||||| || || Sbjct 385 ACTCAACCTT-CAACCTGCCCAT-GGCTAGATCACCCGGTTT-CGGGTCTACA-CCTTGC 330 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||||||||||| ||||||||| ||| | ||||| ||||||||| ||||||| || | Sbjct 329 AACTAGACGCCCAGTTAAGACTCGGTTTCC-CTACGGCTCCCCTATACGGTTAACCTC-G 272 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAA-------------------------AA 223 | || || ||||||||||||||||||||||| || Sbjct 271 CTACAAAATGTAAGTCGCTGACCCATTATACAATACGCAGTCATGACCCATTATACAAAA 212 Query 224 GGTACGCAGTCACCCAACAAAGTGG-GCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282 ||||||||||||| |||| |||||||||||||||||| ||||||||||||| | Sbjct 211 GGTACGCAGTCACGGTCTCAAGTACCGCTCCCACTGCTTGTACGTATACGGTTTCAGGTT 152 Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342 |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 151 CTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTAT 92 Query 343 CGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT 402 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 91 CGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATATCA 32 Query 403 CGTGCTCCGTCCTACTCG 420 |||| ||| |||||||| Sbjct 31 CGTGTCCCGCCCTACTCG 14 >seq18384 Length=957298 Score = 73.4 bits (80), Expect = 1e-10 Identities = 81/104 (78%), Gaps = 7/104 (7%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 33746 ACGGTTTCACGCCCTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 33688 Query 330 ACTAGTTCACTATCGGTCAGTCAGT---AGTATTTAGCCTTGGA 370 ||| ||| |||||||||| || || ||||||||||||| || Sbjct 33687 ACTTGTTGACTATCGGTC--TC-GTGCCAGTATTTAGCCTTAGA 33647 >seq7953 Length=6969 Score = 73.4 bits (80), Expect = 1e-10 Identities = 81/104 (78%), Gaps = 7/104 (7%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 5205 ACGGTTTCACGCCCTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 5263 Query 330 ACTAGTTCACTATCGGTCAGTCAGT---AGTATTTAGCCTTGGA 370 ||| ||| |||||||||| || || ||||||||||||| || Sbjct 5264 ACTTGTTGACTATCGGTC--TC-GTGCCAGTATTTAGCCTTAGA 5304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239561628032