Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq44214 86.0 4e-15 seq15521 86.0 4e-15 seq3013 86.0 4e-15 seq32350 77.0 2e-12 seq24714 77.0 2e-12 seq4462 77.0 2e-12 >seq44214 Length=1357772 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 645449 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 645506 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 645507 TAAT-CAACGCGAGCT 645521 >seq15521 Length=621416 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 273419 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 273362 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 273361 TAAT-CAACGCGAGCT 273347 >seq3013 Length=830 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 145 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 88 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 87 TAAT-CAACGCGAGCT 73 >seq32350 Length=148373 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||| ||||| || |||||||||||||||| Sbjct 102526 CTCACTAAACCATC-CAATCGGTAGTA-GCGACAGGCGGTGTATACAAAGGGCAGGGACT 102583 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 102584 TAAT-CAATGCAAGCT 102598 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||| ||||| || |||||||||||||||| Sbjct 103791 CTCACTAAACCATC-CAATCGGTAGTA-GCGACAGGCGGTGTATACAAAGGGCAGGGACT 103848 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 103849 TAAT-CAATGCAAGCT 103863 >seq24714 Length=931 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || |||||| | ||||||||| ||||||||||||||||||| Sbjct 187 CTCACTAAACCATC-CAATCAGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACT 244 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 245 TAAT-CAACGCGAGCT 259 >seq4462 Length=1199 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | |||| || || |||||| ||||||||||| ||||||||||||||||||| Sbjct 410 CTCACTTAACCATC-CAATCTGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 467 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 468 TAAT-CAACGCGAGCT 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300337032140