Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq15521 167 4e-39 seq4462 167 4e-39 seq32350 152 1e-34 seq44214 138 2e-30 seq3013 91.5 3e-16 seq24714 87.8 3e-15 seq10030 80.6 5e-13 >seq15521 Length=621416 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 273123 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 273180 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 273181 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 273240 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 273241 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 273300 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 273301 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 273360 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 273361 AAGTCCCTGCCCTTTGTA 273378 >seq4462 Length=1199 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 706 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 649 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 648 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 589 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 588 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 529 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 528 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 469 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 468 AAGTCCCTGCCCTTTGTA 451 >seq32350 Length=148373 Score = 152 bits (168), Expect = 1e-34 Identities = 191/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 102822 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 102765 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 102764 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 102705 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 102704 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 102645 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || ||||||||| ||||| ||| || |||||| Sbjct 102644 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCATTGATT 102585 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 102584 AAGTCCCTGCCCTTTGTA 102567 Score = 149 bits (164), Expect = 1e-33 Identities = 190/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 104087 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 104030 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||| || ||| || | || || || | Sbjct 104029 ATGCCCTTAGATGTCCGGGGCTGCACGCACGACACAATGGGTGGATCAGCGTGTGTCTAC 103970 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 103969 CCTGCGCCGAGAGGTGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 103910 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || ||||||||| ||||| ||| || |||||| Sbjct 103909 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCATTGATT 103850 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 103849 AAGTCCCTGCCCTTTGTA 103832 >seq44214 Length=1357772 Score = 138 bits (152), Expect = 2e-30 Identities = 188/258 (73%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 645839 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 645782 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 645781 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 645722 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 645721 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 645662 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 645661 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 645602 Query 311 ACGTCCCTGCCCTTTGTA 328 | | ||||||||||| Sbjct 645601 AAG----TGCCCTTTGTA 645588 Score = 98.7 bits (108), Expect = 2e-18 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||| || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||| Sbjct 645571 ATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTT 645512 Query 307 GATTACGTCCCTGCCCTTTGTA 328 ||||| |||||||||||||||| Sbjct 645511 GATTAAGTCCCTGCCCTTTGTA 645490 >seq3013 Length=830 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | |||| | | |||| || ||| | | |||||| |||| || ||||||||| Sbjct 5 TCGTGATCGGGACTGGGGATTGAAACAATTTCCCATCAACGTTGAATTCCCAGTAAGCGC 64 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 65 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 104 >seq24714 Length=931 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 524 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 467 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||| | |||| |||||||||| ||| || Sbjct 466 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 428 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || |||||||||| ||||| ||| ||||||||||| |||||||||||||||| Sbjct 284 GAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 228 >seq10030 Length=448 Score = 80.6 bits (88), Expect = 5e-13 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 236 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 293 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 |||||||||||||| | |||| |||||||| Sbjct 294 ATGCCCTTAGATGTCCGGGGCTGCACGCGC 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945644953344