Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq15521 167 4e-39
seq4462 167 4e-39
seq32350 152 1e-34
seq44214 138 2e-30
seq3013 91.5 3e-16
seq24714 87.8 3e-15
seq10030 80.6 5e-13
>seq15521
Length=621416
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 273123 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 273180
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 273181 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 273240
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 273241 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 273300
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 273301 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 273360
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 273361 AAGTCCCTGCCCTTTGTA 273378
>seq4462
Length=1199
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 706 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 649
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 648 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 589
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 588 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 529
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 528 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 469
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 468 AAGTCCCTGCCCTTTGTA 451
>seq32350
Length=148373
Score = 152 bits (168), Expect = 1e-34
Identities = 191/258 (74%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 102822 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 102765
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 102764 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 102705
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 102704 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 102645
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || ||||||||| ||||| ||| || ||||||
Sbjct 102644 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCATTGATT 102585
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 102584 AAGTCCCTGCCCTTTGTA 102567
Score = 149 bits (164), Expect = 1e-33
Identities = 190/258 (74%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 104087 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 104030
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||| || ||| || | || || || |
Sbjct 104029 ATGCCCTTAGATGTCCGGGGCTGCACGCACGACACAATGGGTGGATCAGCGTGTGTCTAC 103970
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 103969 CCTGCGCCGAGAGGTGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 103910
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || ||||||||| ||||| ||| || ||||||
Sbjct 103909 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCATTGATT 103850
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 103849 AAGTCCCTGCCCTTTGTA 103832
>seq44214
Length=1357772
Score = 138 bits (152), Expect = 2e-30
Identities = 188/258 (73%), Gaps = 7/258 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 645839 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 645782
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 645781 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 645722
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 645721 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 645662
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 645661 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 645602
Query 311 ACGTCCCTGCCCTTTGTA 328
| | |||||||||||
Sbjct 645601 AAG----TGCCCTTTGTA 645588
Score = 98.7 bits (108), Expect = 2e-18
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||| || |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||
Sbjct 645571 ATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTT 645512
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||| ||||||||||||||||
Sbjct 645511 GATTAAGTCCCTGCCCTTTGTA 645490
>seq3013
Length=830
Score = 91.5 bits (100), Expect = 3e-16
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
||||| | |||| | | |||| || ||| | | |||||| |||| || |||||||||
Sbjct 5 TCGTGATCGGGACTGGGGATTGAAACAATTTCCCATCAACGTTGAATTCCCAGTAAGCGC 64
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct 65 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 104
>seq24714
Length=931
Score = 87.8 bits (96), Expect = 3e-15
Identities = 81/99 (82%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 524 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 467
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
|||||||||||||| | |||| |||||||||| ||| ||
Sbjct 466 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 428
Score = 77.0 bits (84), Expect = 6e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||| || |||||||||| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct 284 GAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 228
>seq10030
Length=448
Score = 80.6 bits (88), Expect = 5e-13
Identities = 74/90 (82%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 236 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 293
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGC 160
|||||||||||||| | |||| ||||||||
Sbjct 294 ATGCCCTTAGATGTCCGGGGCTGCACGCGC 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 945644953344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |