Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9415 203 1e-49 seq14474 149 2e-33 seq19761 109 2e-21 seq121745 82.4 2e-13 seq43437 78.8 3e-12 seq26944 78.8 3e-12 >seq9415 Length=1591127 Score = 203 bits (224), Expect = 1e-49 Identities = 126/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||| Sbjct 656354 AGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGCTTTCGCTAGA 656295 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 | | || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 656294 TCGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 656235 Query 418 CGAGGCATTTGGCTA 432 | ||||||||||||| Sbjct 656234 CAAGGCATTTGGCTA 656220 >seq14474 Length=800118 Score = 149 bits (164), Expect = 2e-33 Identities = 91/97 (94%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 181614 AAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTCATTGAATTTCTTCACTTTGAA 181673 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||| | ||||||| Sbjct 181674 ATTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 181710 >seq19761 Length=112691 Score = 109 bits (120), Expect = 2e-21 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||| |||||| |||| || |||||| | | |||||||||||||||||| Sbjct 51384 CTCCCACTTATTTTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 51325 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 ||||||||||| |||| |||||||| ||||||| Sbjct 51324 CAGGGTCTTCTATCCCTGCTGATTCTGCCAAGC 51292 >seq121745 Length=420 Score = 82.4 bits (90), Expect = 2e-13 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 376 >seq43437 Length=810924 Score = 78.8 bits (86), Expect = 3e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||| ||||| |||||||||||||||||||||||||| |||||||||| || || || Sbjct 569749 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 569692 >seq26944 Length=3146339 Score = 78.8 bits (86), Expect = 3e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||| ||||| |||||||||||||||||||||||||| |||||||||| || || || Sbjct 2970500 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 2970443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632515443104