Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq9415 203 1e-49
seq14474 149 2e-33
seq19761 109 2e-21
seq121745 82.4 2e-13
seq43437 78.8 3e-12
seq26944 78.8 3e-12
>seq9415
Length=1591127
Score = 203 bits (224), Expect = 1e-49
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||
Sbjct 656354 AGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGCTTTCGCTAGA 656295
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 656294 TCGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 656235
Query 418 CGAGGCATTTGGCTA 432
| |||||||||||||
Sbjct 656234 CAAGGCATTTGGCTA 656220
>seq14474
Length=800118
Score = 149 bits (164), Expect = 2e-33
Identities = 91/97 (94%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 181614 AAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTCATTGAATTTCTTCACTTTGAA 181673
Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||| | |||||||
Sbjct 181674 ATTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 181710
>seq19761
Length=112691
Score = 109 bits (120), Expect = 2e-21
Identities = 80/93 (86%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||| |||||| |||| || |||||| | | ||||||||||||||||||
Sbjct 51384 CTCCCACTTATTTTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 51325
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
||||||||||| |||| |||||||| |||||||
Sbjct 51324 CAGGGTCTTCTATCCCTGCTGATTCTGCCAAGC 51292
>seq121745
Length=420
Score = 82.4 bits (90), Expect = 2e-13
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 376
>seq43437
Length=810924
Score = 78.8 bits (86), Expect = 3e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||| ||||| |||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 569749 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 569692
>seq26944
Length=3146339
Score = 78.8 bits (86), Expect = 3e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||| ||||| |||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 2970500 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 2970443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1632515443104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |