Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq22618 378 2e-102
seq11016 132 1e-28
seq29086 123 8e-26
seq3658 123 8e-26
seq120915 111 5e-22
seq2527 95.1 4e-17
seq79497 93.3 1e-16
seq161938 75.2 3e-11
>seq22618
Length=5300
Score = 378 bits (418), Expect = 2e-102
Identities = 409/539 (76%), Gaps = 45/539 (8%)
Strand=Plus/Minus
Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 3074 CTCATTCCAATTACAGGGCCTCGAAAGAGACCTGTATTGTTATTTTTCGTCACTACCTCT 3015
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3014 CCGAGTCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 2955
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 2954 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 2895
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241
| ||| ||||||| |||||| ||||| ||||||| ||| | ||||| | |
Sbjct 2894 CGCCTAAAGTACCATCAAAAGTT------GCAGACATTTGAAAGAATCGTCGCCACCGCA 2841
Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------GG 281
|||| | ||||| | | ||||| || ||||||| ||
Sbjct 2840 AAGGGCGCGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGGGACCAGGGCGGGGACGG 2781
Query 282 AGCCCCGA-AGGGCGTTGGTTTTTTATCTAATAAATACA-----CCCCTTCCG------- 328
| |||||| | | |||||| |||| |||||| || |||| |||
Sbjct 2780 ATCCCCGACCCCGGATGGGTTTTGGATCTGATAAATGCACGCGTCCCCGCCCGCGAGGGA 2721
Query 329 AAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTA 385
||||| | | || ||||||||||||||| ||||| |||| |||||||| ||| |
Sbjct 2720 GGGTCGGCGCTCGTTTGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTACCGGG 2661
Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445
|| | |||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 2660 TGGAGCGATCAAAGGGACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGG 2601
Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2600 CCGTGTGTACTTAGACCTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 2543
>seq11016
Length=39073
Score = 132 bits (146), Expect = 1e-28
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129
|| ||||||||||||| || | || || |||||||||||| |||||| ||| |||||||
Sbjct 10474 GGAATTGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 10533
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189
|||| || |||||| |||| | ||||| |||||| | | |||||| ||||| ||
Sbjct 10534 CCCTGTCTGGAATCAAACCATGATTCCACGTTACAAATGGTCACCATGTTAGGCACATAA 10593
Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227
|||||| |||||| ||| |||||| ||||||||||
Sbjct 10594 AGTACCATTTAAAGTTTATAAGGCAGATATTTGAATGA 10631
>seq29086
Length=60093
Score = 123 bits (136), Expect = 8e-26
Identities = 137/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104
||| || ||||| |||| | || |||| ||||||||||| || | || || ||||||
Sbjct 19636 TTTTTTATCACTTTCTCCTCAAGTTGGGAATGGGTAATTTGTGCACATGTTGTGTTCCTT 19577
Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164
|||| | |||||| ||| ||||| |||||||| ||||| |||| | ||||| ||| ||
Sbjct 19576 GGATATAGTAGCCATTTTTCAGGATCCCTCTCTGGAATTAAACCATGATTCCACGTCACA 19517
Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224
| | |||||| ||||| || |||||| |||||| |||||| ||| |||| ||
Sbjct 19516 TATGGTCACCATGTTAGGCACATAAAGTACCATTTAAAGTTTATAGGGTAGACATTTAAA 19457
Query 225 TGA 227
|||
Sbjct 19456 TGA 19454
Score = 123 bits (136), Expect = 8e-26
Identities = 137/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104
||| || ||||| |||| | || |||| ||||||||||| || | || || ||||||
Sbjct 20245 TTTTTTATCACTTTCTCCTCAAGTTGGGAATGGGTAATTTGTGCACATGTTGTGTTCCTT 20186
Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164
|||| | |||||| ||| ||||| |||||||| ||||| |||| | ||||| ||| ||
Sbjct 20185 GGATATAGTAGCCATTTTTCAGGATCCCTCTCTGGAATTAAACCATGATTCCACGTCACA 20126
Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224
| | |||||| ||||| || |||||| |||||| |||||| ||| |||| ||
Sbjct 20125 TATGGTCACCATGTTAGGCACATAAAGTACCATTTAAAGTTTATAGGGTAGACATTTAAA 20066
Query 225 TGA 227
|||
Sbjct 20065 TGA 20063
>seq3658
Length=281283
Score = 123 bits (136), Expect = 8e-26
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129
|| || |||||||||| || | || || |||||||||||| |||||| ||| |||||||
Sbjct 136065 GGAATGGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 136124
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189
|||| || |||||| |||| | ||||| ||||| | | |||||| ||||| ||
Sbjct 136125 CCCTGTCTGGAATCAAACCATGATTCCATGTTACAAATGGTCACCATGTTAGGCACATAA 136184
Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227
|||||| |||||| ||| |||||| ||||||||||
Sbjct 136185 AGTACCATTTAAAGTTTATAAGGCAGATATTTGAATGA 136222
>seq120915
Length=413
Score = 111 bits (122), Expect = 5e-22
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123
|| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 343 CGAGTCGGAAATGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 402
Query 124 CAGGCTCCCTC 134
|||||||||||
Sbjct 403 CAGGCTCCCTC 413
>seq2527
Length=1089596
Score = 95.1 bits (104), Expect = 4e-17
Identities = 114/152 (75%), Gaps = 5/152 (3%)
Strand=Plus/Plus
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGAT 406
|||| | ||||||||| ||| ||||||||| || | || |||| ||| ||| ||
Sbjct 1050704 TATTTGGTCTAGAATTGGCACAGTTATCCATATACAGGGTGGAGCTATTAAAGGAACCAT 1050763
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
|| ||||||||||| | || | ||||| |||||| || || | |||||||| ||
Sbjct 1050764 AA-TGATTTAATGAAGCGTTTGTAGTTTTACTGTACTGACTGTCTGCACTTAGACTTGTG 1050822
Query 467 TGGCTTAATCTTTGAGACAAG--CATATGACT 496
|| |||||||||||||||||| ||||| |||
Sbjct 1050823 TGTCTTAATCTTTGAGACAAGCTCATATTACT 1050854
>seq79497
Length=237
Score = 93.3 bits (102), Expect = 1e-16
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129
|| || |||||||||| || | || || |||||||||||| |||||| ||| |||||||
Sbjct 134 GGAATGGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 75
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
|||| || |||||| |||| | ||||| ||||| | | |||||| |||||
Sbjct 74 CCCTGTCTGGAATCAAACCATGATTCCATGTTACAAATGGTCACCATGTTAGGC 21
>seq161938
Length=1537
Score = 75.2 bits (82), Expect = 3e-11
Identities = 51/56 (91%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 57 ACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112
|| || |||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1483 ACATCTCCGT-TCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 1537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507920331008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |