Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq22618 378 2e-102 seq11016 132 1e-28 seq29086 123 8e-26 seq3658 123 8e-26 seq120915 111 5e-22 seq2527 95.1 4e-17 seq79497 93.3 1e-16 seq161938 75.2 3e-11 >seq22618 Length=5300 Score = 378 bits (418), Expect = 2e-102 Identities = 409/539 (76%), Gaps = 45/539 (8%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3074 CTCATTCCAATTACAGGGCCTCGAAAGAGACCTGTATTGTTATTTTTCGTCACTACCTCT 3015 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3014 CCGAGTCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 2955 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 2954 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 2895 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 | ||| ||||||| |||||| ||||| ||||||| ||| | ||||| | | Sbjct 2894 CGCCTAAAGTACCATCAAAAGTT------GCAGACATTTGAAAGAATCGTCGCCACCGCA 2841 Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------GG 281 |||| | ||||| | | ||||| || ||||||| || Sbjct 2840 AAGGGCGCGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGGGACCAGGGCGGGGACGG 2781 Query 282 AGCCCCGA-AGGGCGTTGGTTTTTTATCTAATAAATACA-----CCCCTTCCG------- 328 | |||||| | | |||||| |||| |||||| || |||| ||| Sbjct 2780 ATCCCCGACCCCGGATGGGTTTTGGATCTGATAAATGCACGCGTCCCCGCCCGCGAGGGA 2721 Query 329 AAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTA 385 ||||| | | || ||||||||||||||| ||||| |||| |||||||| ||| | Sbjct 2720 GGGTCGGCGCTCGTTTGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTACCGGG 2661 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || | |||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 2660 TGGAGCGATCAAAGGGACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGG 2601 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2600 CCGTGTGTACTTAGACCTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 2543 >seq11016 Length=39073 Score = 132 bits (146), Expect = 1e-28 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 || ||||||||||||| || | || || |||||||||||| |||||| ||| ||||||| Sbjct 10474 GGAATTGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 10533 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||| || |||||| |||| | ||||| |||||| | | |||||| ||||| || Sbjct 10534 CCCTGTCTGGAATCAAACCATGATTCCACGTTACAAATGGTCACCATGTTAGGCACATAA 10593 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||| |||||| ||| |||||| |||||||||| Sbjct 10594 AGTACCATTTAAAGTTTATAAGGCAGATATTTGAATGA 10631 >seq29086 Length=60093 Score = 123 bits (136), Expect = 8e-26 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||| || ||||| |||| | || |||| ||||||||||| || | || || |||||| Sbjct 19636 TTTTTTATCACTTTCTCCTCAAGTTGGGAATGGGTAATTTGTGCACATGTTGTGTTCCTT 19577 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 |||| | |||||| ||| ||||| |||||||| ||||| |||| | ||||| ||| || Sbjct 19576 GGATATAGTAGCCATTTTTCAGGATCCCTCTCTGGAATTAAACCATGATTCCACGTCACA 19517 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 | | |||||| ||||| || |||||| |||||| |||||| ||| |||| || Sbjct 19516 TATGGTCACCATGTTAGGCACATAAAGTACCATTTAAAGTTTATAGGGTAGACATTTAAA 19457 Query 225 TGA 227 ||| Sbjct 19456 TGA 19454 Score = 123 bits (136), Expect = 8e-26 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||| || ||||| |||| | || |||| ||||||||||| || | || || |||||| Sbjct 20245 TTTTTTATCACTTTCTCCTCAAGTTGGGAATGGGTAATTTGTGCACATGTTGTGTTCCTT 20186 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 |||| | |||||| ||| ||||| |||||||| ||||| |||| | ||||| ||| || Sbjct 20185 GGATATAGTAGCCATTTTTCAGGATCCCTCTCTGGAATTAAACCATGATTCCACGTCACA 20126 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 | | |||||| ||||| || |||||| |||||| |||||| ||| |||| || Sbjct 20125 TATGGTCACCATGTTAGGCACATAAAGTACCATTTAAAGTTTATAGGGTAGACATTTAAA 20066 Query 225 TGA 227 ||| Sbjct 20065 TGA 20063 >seq3658 Length=281283 Score = 123 bits (136), Expect = 8e-26 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 || || |||||||||| || | || || |||||||||||| |||||| ||| ||||||| Sbjct 136065 GGAATGGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 136124 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||| || |||||| |||| | ||||| ||||| | | |||||| ||||| || Sbjct 136125 CCCTGTCTGGAATCAAACCATGATTCCATGTTACAAATGGTCACCATGTTAGGCACATAA 136184 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||| |||||| ||| |||||| |||||||||| Sbjct 136185 AGTACCATTTAAAGTTTATAAGGCAGATATTTGAATGA 136222 >seq120915 Length=413 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 || ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 343 CGAGTCGGAAATGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 402 Query 124 CAGGCTCCCTC 134 ||||||||||| Sbjct 403 CAGGCTCCCTC 413 >seq2527 Length=1089596 Score = 95.1 bits (104), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGAT 406 |||| | ||||||||| ||| ||||||||| || | || |||| ||| ||| || Sbjct 1050704 TATTTGGTCTAGAATTGGCACAGTTATCCATATACAGGGTGGAGCTATTAAAGGAACCAT 1050763 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 || ||||||||||| | || | ||||| |||||| || || | |||||||| || Sbjct 1050764 AA-TGATTTAATGAAGCGTTTGTAGTTTTACTGTACTGACTGTCTGCACTTAGACTTGTG 1050822 Query 467 TGGCTTAATCTTTGAGACAAG--CATATGACT 496 || |||||||||||||||||| ||||| ||| Sbjct 1050823 TGTCTTAATCTTTGAGACAAGCTCATATTACT 1050854 >seq79497 Length=237 Score = 93.3 bits (102), Expect = 1e-16 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 || || |||||||||| || | || || |||||||||||| |||||| ||| ||||||| Sbjct 134 GGAATGGGGTAATTTGTGCACATGTTGTGTTCCTTGGATGTAGTAGCCATTTTTCAGGCT 75 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||| || |||||| |||| | ||||| ||||| | | |||||| ||||| Sbjct 74 CCCTGTCTGGAATCAAACCATGATTCCATGTTACAAATGGTCACCATGTTAGGC 21 >seq161938 Length=1537 Score = 75.2 bits (82), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 57 ACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 || || |||| |||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1483 ACATCTCCGT-TCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507920331008