Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq147642 127 2e-24
seq15552 127 2e-24
seq19765 98.7 8e-16
seq34520 95.1 1e-14
>seq147642
Length=763
Score = 127 bits (140), Expect = 2e-24
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| ||||| || ||||||| |||||||| |||||||||| ||||| ||
Sbjct 628 GGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTG 687
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| |||||||| ||||| ||||||||||| | |||||| || ||||||||||| ||
Sbjct 688 GTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTCTGTCTG 747
Query 66169 GGACTCAATGATGGC 66183
||||||||||||||
Sbjct 748 AGACTCAATGATGGC 762
>seq15552
Length=1137653
Score = 127 bits (140), Expect = 2e-24
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| |||||||| ||||||| |||||||| |||||||||| ||||| ||
Sbjct 1133833 GGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTG 1133774
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| || ||||| ||||| ||||||||||| | |||||| || ||||||||||| ||
Sbjct 1133773 GTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTG 1133714
Query 66169 GGACTCAATGATGGC 66183
||||||||||||||
Sbjct 1133713 AGACTCAATGATGGC 1133699
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129
||||| |||||||| |||||||||| ||||| || || || ||||| ||||| ||
Sbjct 1133700 GCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGC 1133641
Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189
||||||||| | |||||| || ||||||||||| || |||||||||||||| | |||
Sbjct 1133640 ATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGAGACTCAATGATGGCATACCA 1133581
Query 66190 AAGAGCGCGTGCCTTCACC 66208
|| | |||||||||
Sbjct 1133580 CAGCTGCTGAGCCTTCACC 1133562
>seq19765
Length=1114994
Score = 98.7 bits (108), Expect = 8e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || || | |||||||| |||||| | || || ||||| |||||||| |||||||
Sbjct 413793 TGGAGCGATTTACTCAGGAGGTCCAAGTGACCGAAGCCCGTTGCTTCTACGGTTTCCAGA 413852
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|||| ||||| || ||||||| || ||||||||| | | || || || |||||||
Sbjct 413853 TTGCAATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCA 413909
>seq34520
Length=2775569
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || || | ||||| || |||||| | || || || || |||||||| |||||||
Sbjct 504655 TGGAGCGATTTACTCAGGAAGTCCAAGTGACTGAAGCCCGCTGCTTCTACGGTTTCCAGA 504714
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|||||||||| || ||||||| || ||||||||| | | || || || |||||||
Sbjct 504715 TTGCCATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCA 504771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396772522712720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |