Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2787 203 5e-50 seq113 105 1e-20 seq2498 96.9 6e-18 seq67 82.4 1e-13 seq305 78.8 1e-12 >seq2787 Length=14359 Score = 203 bits (224), Expect = 5e-50 Identities = 187/230 (81%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGA 93 |||| | ||||||||||||||||||||||||||||||| |||| || ||| |||||| | Sbjct 5914 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCAATCT--CATGTGGCTGAA 5970 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC---CATAGTCGATGGGG--CTATTTA 148 |||| | |||||||||||||| | | | || || || | | | || ||| Sbjct 5971 CGCCACTTGTCCCTCTAAGAAGTTGGACGCTGACTGGCA-AGGGGCCGCGTAACTCGTTA 6029 Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 ||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 6030 GCATGTCGGAGTCTCGTTCGTTATGGGAATTAACCAGACAAATCGCTCCACCAACTAAGA 6089 Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 6090 ATGGCCATGCTCCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 6139 >seq113 Length=817507 Score = 105 bits (116), Expect = 1e-20 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 326089 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 326148 Query 219 A 219 | Sbjct 326149 A 326149 >seq2498 Length=44217 Score = 96.9 bits (106), Expect = 6e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||| ||| | ||| |||||||| Sbjct 404 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCAACCACGGTATCGAGAAAGAG 463 Query 246 CTATCAATCTGTC 258 | |||||||||| Sbjct 464 CCCTCAATCTGTC 476 >seq67 Length=1021483 Score = 82.4 bits (90), Expect = 1e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| |||| ||||| ||| || ||||||||| ||||||| |||||||||| | ||||| Sbjct 584475 TCTTGTTCATTATCAGAAACAATCAGACAAATTGCTCCACCGACTAAGAACGCCTATGCA 584416 Query 220 CCACCACCCATAGAA 234 |||||||||| |||| Sbjct 584415 CCACCACCCACAGAA 584401 >seq305 Length=591578 Score = 78.8 bits (86), Expect = 1e-12 Identities = 67/82 (82%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||| || ||| |||||||| |||||| | |||| |||||| |||||| |||||||| Sbjct 441754 TAACCGGAGAAACTGCTCCACCAGCTAAGACCAGCCACGCACCATCACCCACAGAATCAA 441695 Query 239 GAAA--GAGCTATCAATCTGTC 258 ||| |||| ||||||||||| Sbjct 441694 AAAAAAGAGCAATCAATCTGTC 441673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796755090858