Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 237 1e-57 seq15 116 3e-21 seq1226 114 1e-20 seq1106 114 1e-20 seq12 89.7 4e-13 >seq11 Length=11238946 Score = 237 bits (262), Expect = 1e-57 Identities = 588/875 (67%), Gaps = 37/875 (4%) Strand=Plus/Plus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | |||||| || || | || ||||||||||| || | || || | Sbjct 5178570 CAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGA 5178629 Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 || || ||| ||| |||| || ||| |||| || | |||||||| ||| || || Sbjct 5178630 GCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACA 5178689 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTA 65889 || || || || || | || ||| ||||| | |||| || || || || || ||||| Sbjct 5178690 CCGATTCCTATTGGCCTGTGGCGCTTGTTGGA-CTTCTCAGCTTCGGGCACTGGATAGTA 5178748 Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTC-GCAAT 65947 ||| ||||| || || ||||| || | | || || | | | || | || | Sbjct 5178749 ATTAATATCTATGATCTTGTTCAAGTT---TTTGACAACTACCTTGGTCACAGCAGCTAG 5178805 Query 65948 TGTTCGAAA-TCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 | || |||| |||||| | || || | ||| || ||| ||| || Sbjct 5178806 TTTTTGAAAGTCAAAA------GTCCGCTCAGCGGTGACGTACATG------TTG---AG 5178850 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAATTT 66065 || | || || || || || || |||| |||||| | || ||| || || ||||||| Sbjct 5178851 TGCGACGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTGGTGTATTCCACAATTT 5178909 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 | ||||| ||||| |||| |||||||||| |||||| || || ||||| | ||||| Sbjct 5178910 CTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGC 5178969 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | ||||| ||||| | |||||| ||||||||||| ||| |||||||| |||||||| | Sbjct 5178970 AGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCAT 5179029 Query 66186 GCCAAAGAGCGCGTGCCTTCACCGTACG---TAC-CGCCCTACCTTTGCGTTCGTAATGT 66241 |||||| | ||||||||| ||| || || ||| | || ||||| | Sbjct 5179030 GCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTT----CTCGTATTTG 5179085 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 |||||| | || || || ||||| || ||| | ||||| | || |||| Sbjct 5179086 GTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGA 5179145 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||| || ||||| || | || || | ||| || | ||||| ||||| Sbjct 5179146 CACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCAC 5179205 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTC 66420 | ||||||| || || | |||| |||||||| | || ||| || || ||| || Sbjct 5179206 ATACCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTG-TTCTTCTTCAACTC 5179264 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||| || |||| |||||| ||||||||||| |||||||| | |||| | Sbjct 5179265 CAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAG-CCCCAGGCC 5179323 Query 66481 T-TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 | ||| ||||| ||||| || ||||| ||| |||||| | || | || ||| || | Sbjct 5179324 TCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGA 5179383 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | ||||| || || |||||||||||||| ||||| Sbjct 5179384 CAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATG 5179418 >seq15 Length=11516971 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| ||||| || ||||||||||| ||| | |||||||||| ||||| || Sbjct 9312829 GTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 9312888 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || |||||||| || ||| Sbjct 9312889 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTTTGA 9312948 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| |||||||||| ||| || | ||||||||| Sbjct 9312949 GACTCGATGATGGCGTACCACAGCTGCTGGGCCTTCACC 9312987 >seq1226 Length=411779 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| | ||||||||||| || ||||||| | |||||||| || ||||||| Sbjct 204112 TGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTTCCAGA 204171 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || || || || ||||||| || Sbjct 204172 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTCCTGATTGACACCTACATCAAGG 204231 Query 61376 A 61376 | Sbjct 204232 A 204232 >seq1106 Length=3230 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| | ||||||||||| || ||||||| | |||||||| || ||||||| Sbjct 3004 TGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTTCCAGA 3063 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || || || || ||||||| || Sbjct 3064 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTCCTGATTGACACCTACATCAAGG 3123 Query 61376 A 61376 | Sbjct 3124 A 3124 >seq12 Length=10661439 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || ||||| | |||||| ||| |||| | ||||||| | Sbjct 1963625 CAGGAGGTGCAGGTTCCTGAAGCGCGCTCCTTCTACAGCTGCCAGGTCCTCATGGAGTCT 1963684 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||||||||||||||| | |||||| | || ||||||||||| Sbjct 1963685 GTGCACTCGGAGATGTACAGCCTGCTCATCAACACCTACATCAGGGA 1963731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534881964400