Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq115734 288 2e-75 seq54788 78.8 2e-12 >seq115734 Length=4856 Score = 288 bits (318), Expect = 2e-75 Identities = 253/313 (81%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCC-GCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||| | | ||| ||| ||| ||| || || || || |||| | ||| || | ||||| Sbjct 1656 GTCTGACTGGGTCTTACCTCTTGGTGAGCCAGCGTGGCCTTTATTGGTTGCGTTGGGGAA 1715 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 ||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||| Sbjct 1716 CCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGTCTGAATACATT 1775 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| Sbjct 1776 AGCATGGAATAATAGAATAGGACGTGCGATCCTATTTTGTTGGTTTCTAGAGTCGCCGTA 1835 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 1836 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 1895 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| ||||| ||||||||| || |||||||||||||||||||||| ||| Sbjct 1896 CCGGCGCAAGACCAACTATTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAA 1954 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 1955 CGAAGGTTAGGGG 1967 >seq54788 Length=11248 Score = 78.8 bits (86), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || || | | | | | |||||||| |||||||||| ||| Sbjct 4939 ATGCTCTTAGCTGAGTGTCCCCCGGGGTCTGAAGTGTTTACTTTCAAAAAATTAG--TGT 4882 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||||||| | || |||||| | | |||||||| ||| ||||| || | Sbjct 4881 TCAAAGCAGGCCTGGTCGCCTGAATACCACAACTAGGAATAATGGAACAGGACTCCCGAT 4822 Query 156 TCTATTTTGTTGGTTT 171 |||||||||| | ||| Sbjct 4821 TCTATTTTGTGGATTT 4806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913982216576