Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq115734 450 6e-124 seq23283 131 7e-28 seq23163 102 3e-19 seq20416 102 3e-19 seq4057 98.7 4e-18 >seq115734 Length=4856 Score = 450 bits (498), Expect = 6e-124 Identities = 510/680 (75%), Gaps = 43/680 (6%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| ||||||||| |||||||| | ||||||||||||| Sbjct 3764 GAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAAT 3823 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 3824 ATTGGCGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 3883 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA-CCAGACTTGCCC 218 ||||||||||| || |||||||||||||||||||||| ||||| | |||| | | | Sbjct 3884 AGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTCG 3943 Query 219 GCAGTTGCTCAACCGGCCCCTCGGCC--GGTGCACTCTTCT-GCGGTCAGGCCAGCATCA 275 | | ||| | | ||| | | | ||| | || || | | || |||||||| Sbjct 3944 GTTGGGAATCAGTCTCGCTCTCTTGCTTGACGTACT-TCCTAGCTGACGGGTCAGCATCA 4002 Query 276 GCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCC 335 | | | || ||||||||| |||||||||| || |||||| | |||||||||| Sbjct 4003 GTTTTGATCGTTGGATAAAGGTTGGAGGAATGTGGCACC-TTCGGGTG-TGTTATAGCCT 4060 Query 336 GGGGTGGAATGCGGCCCGCCTGGACTGAGG---TCCGCGCTCCG---------------- 376 | | | || | | | ||||||||| || || | ||| Sbjct 4061 CTGATTGTATACAACG-GTTGGGACTGAGGAACTCAGCACGCCGAAAGGCCGGGTACTTG 4119 Query 377 ------------GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACG 423 ||| ||||||||||| |||||| | ||| || ||||||||| |||||| Sbjct 4120 TACCACGTACGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACG 4179 Query 424 GACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAA 483 |||||||||||||||||| ||||||| |||||||| ||||||| | ||| ||||||| Sbjct 4180 GACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAA 4239 Query 484 GTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATG 543 ||||| || || |||| | | || ||||| | || ||| || || || || || | Sbjct 4240 GTGAA---AGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTCTCTGACG 4296 Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||| | | ||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 4297 GATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGG 4356 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| Sbjct 4357 CGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGGTCGTC 4416 Query 664 AAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| Sbjct 4417 GAATTTGGGTATAGGGGCGA 4436 >seq23283 Length=15129 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 12293 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 12234 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || || ||| ||| ||| ||||| | ||||| | ||||||||||||||| Sbjct 12233 GGCCCGTAGTGGTCCTGACGTACAAATTGGTCGTCCGACCTGGGTATAGGGGCGA 12179 >seq23163 Length=55050 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||| |||||||||||| |||| |||| |||||||||| ||||||||||||| Sbjct 18440 GGACCCAAAAAATGGTGAACTATACCTGGGCAGGGCGAAGCCAGAGAAAACTCTGGTGGA 18499 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | ||| || | | ||||||| | ||||| || ||||||| |||||| Sbjct 18500 GGCCCATAGCAGTCCGGAAATGCAAATTGGTCGTCCGATCTGGGTATTGGGGCG 18553 >seq20416 Length=40040 Score = 102 bits (112), Expect = 3e-19 Identities = 102/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 |||| |||| | || | ||||| |||||||| ||||||||||| |||| || Sbjct 10099 AGTATGAGCGCATGTGATAGGACCTGAAAGATG---AACTATGCCTGGGCAGGGCAAAAT 10043 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||| |||||||||| | |||||| ||| | ||||||||| ||||| | | Sbjct 10042 CAGAGGAAACTTTGGTGGAGGCCCATAGCGGTCCTGACATGCAAATCGGTCGTCCGACCT 9983 Query 670 GGGTATAGGGGC 681 |||||||||||| Sbjct 9982 GGGTATAGGGGC 9971 >seq4057 Length=18368 Score = 98.7 bits (108), Expect = 4e-18 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||| |||||||| | || ||| || ||| | | ||||| ||||||| Sbjct 15437 GAGTCGAGTTGTTTGGAAATGCAGCCCAAAGCGGGTGGAAAACTCCATCTAAGGCTAAAT 15496 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||||| | | ||||| ||||||| ||||| || Sbjct 15497 ACCAGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTT--AA 15554 Query 160 AGAGAGTTAAAAAGCA 175 |||||| | |||||| Sbjct 15555 AGAGAGAAAGAAAGCA 15570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077145820100