Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq115734 325 6e-87 seq95124 167 4e-39 seq18616 116 6e-24 seq10595 84.2 3e-14 >seq115734 Length=4856 Score = 325 bits (360), Expect = 6e-87 Identities = 227/257 (88%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct 2469 ACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 2410 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| |||||||||| | ||| || || | ||||||||||||||| | || Sbjct 2409 CCTGTTATTGC-TCAAACTTCCGTCAGCTAGACGCTGACAGTCCCTCTAAGAAGTCGGCG 2351 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| | | || || | ||| |||||||||||||||||||||||||||||||||||| Sbjct 2350 ACCAGCAAAAGCCGGCCTGACTAGTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 2291 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 2290 CCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAAAATCATGAA 2231 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 2230 AGAGCTATCAATCTGTC 2214 >seq95124 Length=7622 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 6 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 65 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 66 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 105 >seq18616 Length=3459 Score = 116 bits (128), Expect = 6e-24 Identities = 146/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 |||||||||| |||| |||| || | ||||| | |||| | || | ||||||||| Sbjct 3459 CAGACCTGTTCTTGC-TCAATCTAGTGT-GGCTGAATGCCACTTGTTC-TCTAAGAAGTT 3403 Query 118 AGCCACCAAC--CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| || || | | || ||| |||||| | | ||||| ||| |||| | Sbjct 3402 GGACACTGACTGCACGGGCTGTGTAACTACTTAGCATGCCAGAGTCTCATTCATTATTGA 3343 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 | ||||| ||||||||| || ||||||||||||| |||||||||| |||||| ||||| Sbjct 3342 ACTTAACAAGACAAATCGCTTCACCAACTAAGAATGGCCATGCAC---CACCCACAGAAT 3286 Query 236 CAAGAAAGAGCTATC 250 ||||||||||||||| Sbjct 3285 CAAGAAAGAGCTATC 3271 >seq10595 Length=20115 Score = 84.2 bits (92), Expect = 3e-14 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||| | |||||||||| |||| ||| ||||||||| Sbjct 10590 CAAATCACTCCACCAACTAAGAATGACCATGCACCAACACC---GCAATACAGAAAGAGC 10534 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 10533 TATCAATCTGTC 10522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795772894422