Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq115732 468 9e-130 seq92023 138 2e-30 seq93604 136 7e-30 seq18457 131 3e-28 seq114939 127 3e-27 seq18779 111 3e-22 seq18617 111 3e-22 seq51357 91.5 3e-16 >seq115732 Length=2673 Score = 468 bits (518), Expect = 9e-130 Identities = 262/264 (99%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1646 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 1705 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1706 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1765 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1766 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 1825 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1826 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAAGGATCGATAGGC 1885 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 1886 CACACTTTCATGGTTTGTATTCAC 1909 >seq92023 Length=12284 Score = 138 bits (152), Expect = 2e-30 Identities = 148/204 (73%), Gaps = 35/204 (17%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| Sbjct 9965 TCATCAGTAGGGTAAAACTAACCTGTCTCGTGACGGTCTAAACCCAGCGAGCATTCCCTA 10024 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| | |||||| |||||||| |||||||||||| ||||| ||| | Sbjct 10025 TTAGTGGATAAACAATACAACGCTTGGTGAATTCTGCTTCACAATGAT--GAATA----- 10077 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||| || ||||||||||||||||||| | Sbjct 10078 ----------------------------ATGAACACTCAGCTGCCACAAGCCAGTTATTC 10109 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 | ||||||||||||||| |||||| Sbjct 10110 CGGTGGTAACTTTTCTGACACCTC 10133 >seq93604 Length=7232 Score = 136 bits (150), Expect = 7e-30 Identities = 135/173 (78%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT- 114 ||||| |||||||||| |||||||| ||||||||||||| ||||||| ||| || Sbjct 5038 TCTCACATCGGTCTAAACACAGCTCACATTCCCTATTAGTGA---AACAATCAAACACTG 5094 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | |||||| ||| |||||||||||| ||| || ||||||||||||||||| | Sbjct 5095 TTTTTCATTCTGTTTCTGTATGATAGGAAAAGCTGATGGAGAAGGATCAAAAAGCAAAAT 5154 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||| ||||| ||||||| |||||||| ||| ||| | ||||||| Sbjct 5155 TGCTATGAATACTTGGGCGCCACAAACCAGTTATTCCTTAGGTGAGTTTTCTG 5207 >seq18457 Length=9722 Score = 131 bits (144), Expect = 3e-28 Identities = 100/116 (86%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||| ||||||||| | |||| ||||||||||||| | | || | Sbjct 4392 GAATTCTGCTTCACAATGAAAGGAAGAGCTGGCATC-AAGGATCAAAAAGTAGCATCAGT 4450 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct 4451 ATGAAAGCTTGGCTGCCACAAGCCAGTTATCCTTGTGGTAAC-TTTCTTGCACCTC 4505 >seq114939 Length=5372 Score = 127 bits (140), Expect = 3e-27 Identities = 142/188 (76%), Gaps = 15/188 (8%) Strand=Plus/Minus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT-AGTGGGTGAACAAT 106 |||| |||||||||||| | | |||||||||| || |||||| | ||||||| |||| Sbjct 5140 CTAATCTGTCTCATGACTG----ATCCCAGCTCACTTTACCTATTTAATGGGTGACCAAT 5085 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||| || ||||||| |||| | || |||| |||||| ||||||||||| Sbjct 5084 CCAACACT---------CTGCTTCATAATGA-ATGATGAGCTGACATCAAAGGATCAAAA 5035 Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 || || ||||||||||| ||| | | | |||||| |||| ||||| ||||||||| Sbjct 5034 AGAGACATCGCTATGAACTTTTGTCCGTCGTAAGCCACTTATGTCTGTGCTAACTTTTCA 4975 Query 227 GGCACCTC 234 | |||||| Sbjct 4974 GACACCTC 4967 >seq18779 Length=13470 Score = 111 bits (122), Expect = 3e-22 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 6548 TCAAAAAGCGACGTCACTATGAACGCTTGGCCGCCACAAGTCAGTTATCCCTGTGGTAAC 6607 Query 221 TTTTCTGGCACCTC 234 ||||||| |||||| Sbjct 6608 TTTTCTGACACCTC 6621 >seq18617 Length=13940 Score = 111 bits (122), Expect = 3e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| ||||||||||||||||| ||| ||| ||| ||||||| ||||||||||| |||| Sbjct 7548 ACATTGAAGGATCAAAAAGCAATGTCACTAGGAATGCTTGGCCACCACAAGCCAGCTATC 7489 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||||||||||||| || ||| || | |||| Sbjct 7488 CCTGTGGTAACTTTTCTGACATCTCCTGCTTAAAAT 7453 >seq51357 Length=27231 Score = 91.5 bits (100), Expect = 3e-16 Identities = 97/126 (77%), Gaps = 8/126 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT- 89 |||||||||| | ||||||||||||| | || ||||||||||||||||| |||||| Sbjct 2716 TCATCAGTAGCATCTAACTAACCTGTCTTACAACAGTCTAAACCCAGCTCACCTTCCCTA 2657 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||||| |||||||| || | || ||||| ||| |||| |||||||| | Sbjct 2656 ATAAGTGGCTGAACAAT---TCGGT----GACTTCTGTTTCACAATGACTGGAAGAGCTG 2604 Query 150 ACATCG 155 |||||| Sbjct 2603 ACATCG 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853263118272