Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq115734 367 2e-99 seq95123 111 3e-22 seq18617 78.8 2e-12 >seq115734 Length=4856 Score = 367 bits (406), Expect = 2e-99 Identities = 271/311 (87%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||| ||| |||||| ||||| || |||||||| |||||||| Sbjct 2305 GAACGAGACCTTAACCTGCTAACTAGTCAGGCCGGCTTTTGCTGGTCGCCGACTTCTTAG 2364 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| || || || ||| || ||||||||||| |||||||||||||||||||||||| Sbjct 2365 AGGGACTGTCAGCGTCTAGCTGACGGAAGTTTGAG-CAATAACAGGTCTGTGATGCCCTT 2423 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||| | |||| |||||||||||||||||||||||||| ||||||| |||||||| || Sbjct 2424 AGATGTCCGGGGCTGCACGCGCGCTACACTGACAGAGCCAGCGAGTTC-TCACCTTGTCC 2482 Query 199 GGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 | ||||| |||||||||||||| ||||||||||||| | ||||| | | ||||||||||| Sbjct 2483 GAAAGGTACTGGGTAATCTTGTGAAACTCTGTCGTGATAGGGATTGGGGATTGCAATTAT 2542 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 | | | | |||||||||| || |||||||| ||||| ||| ||||||||||| ||||| Sbjct 2543 TTCCCATGAACGAGGAATTCCCAGTAAGCGTAAGTCATAAGCTCGCGTTGATTAAGTCCC 2602 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 2603 TGCCCTTTGTA 2613 >seq95123 Length=1308 Score = 111 bits (122), Expect = 3e-22 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | |||||||||||| | | | |||||||||| || |||||||||| |||||| Sbjct 1270 GGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATC 1211 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||| ||||||||||| ||||||||||||||| Sbjct 1210 AGCTCGCGTTGATTAAGTCCCTGCCCTTTGT 1180 >seq18617 Length=13940 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || || | ||||| ||| |||||| ||||| | | |||||||||| || |||||||| Sbjct 75 TCATGATAGGGATTGAG-ATTGCAGTTATTTTCCATGAACGAGGAATTCCAAGTAAGCGT 133 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| | || || ||||||| |||||||||||||||| Sbjct 134 GGGTCTTATGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945939636736