Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq97926 230 2e-55 seq123333 120 2e-22 seq123334 102 6e-17 >seq97926 Length=3727 Score = 230 bits (254), Expect = 2e-55 Identities = 978/1527 (64%), Gaps = 55/1527 (4%) Strand=Plus/Minus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| |||||| || |||||||| ||||| || || | ||| ||||||||| Sbjct 2011 CAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCT 1952 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || || | || || ||||||| || || || || || || || || ||||| Sbjct 1951 GGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCAT 1892 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 || || | ||||| ||| | || |||| | | || || | || | Sbjct 1891 CGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT 1832 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||| ||||| ||| | ||| || | || | ||||| || | || ||| | || Sbjct 1831 CCAGTCCCACA--GGTCTGTCGGCGTCTTCTCC----CACATGTCATACTGGAGGATGCC 1778 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||| | || || || || | | ||||| | || | ||| ||| || | || Sbjct 1777 CTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCA 1718 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 ||| | ||| || | || | || ||||||||||| || | || || | || Sbjct 1717 GCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC 1658 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 ||| ||| || | || || |||||||| || | || ||||| ||||| || || Sbjct 1657 CTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACC 1598 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAAT 65891 || ||||| || | |||||| ||||| | ||||| || | || || |||||| | | Sbjct 1597 GATCCCGATTGGCCTGTGACGCTTGTTGGA-CTTCTCGGCTTCGGGCACTGGGTAGAAGT 1539 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATT 65948 |||| || || || |||| || | |||| | | | |||| | || || Sbjct 1538 TGATGTCAATGATCTTGTTCAGGTT---TTTCACGATTACTTTGGTCACGTAGGCCAGTT 1482 Query 65949 GTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG 66008 || || ||||| | || || || ||| || ||| ||| || | Sbjct 1481 TTTTAAAGTCAAAG------GTCCGCTCAGGGGTGACGTACATG------TTGAGA---G 1437 Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 | | || || || || ||||| || | |||||| | ||| || || || || || | Sbjct 1436 CGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTG 1377 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 |||| || || ||||| |||||||||| |||||| || || ||||| | ||||| | Sbjct 1376 TGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGG 1317 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 | || ||||||| ||||||||| || ||||| || ||||||||||| |||||||||| Sbjct 1316 CGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCC 1257 Query 66189 AAAGAGCGCGTGCCTTCACCGTACG---TACC--GCCCTACCTTTGCGTTCGTAATGTTC 66243 | || | ||||||||| ||| ||| ||||| |||| || || | Sbjct 1256 ACAGTTGCTGAGCCTTCACCACACGCTTGACCCGGCCCT-CCTT----CTCATATTTGGT 1202 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| || || || ||||| || ||| | ||| || || ||||| Sbjct 1201 GTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACA 1142 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAG 66363 |||||| ||||| || | ||| || | ||| || || || || ||||| || Sbjct 1141 CATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG 1082 Query 66364 GGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGA 66422 | ||||||| || || | |||| ||||||||| | || ||| ||||| || || | Sbjct 1081 GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTTTTCTTCAGCTCCA 1023 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 ||||||||| | || ||||| || |||||||| |||||||| | || | | Sbjct 1022 AGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCT 963 Query 66483 TGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGA 66542 || ||| || ||||||||||| || || |||||| | || | || ||| || || | Sbjct 962 TGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTA 903 Query 66543 GCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAA 66602 | ||||| || ||||| ||||||||| ||||| | || || | || | | Sbjct 902 GGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGA 843 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGA 66662 || || ||||| || || || | || |||||| || || | || || Sbjct 842 CAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCAT 783 Query 66663 ATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGG 66720 | ||||| || ||| ||| |||| |||| || ||| |||| || || || || || Sbjct 782 AAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC--AGCTGAGG 725 Query 66721 TTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACAT 66780 || || | || |||||| ||||| | ||||| || || | | |||| Sbjct 724 CCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAG 665 Query 66781 GTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATC 66839 ||||| ||||||||| | ||||||| |||| || || || |||| | ||| || Sbjct 664 CAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACAC-TC 606 Query 66840 GCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTAG 66895 ||| || | || || || || ||| ||| |||| ||||| | || | |||| Sbjct 605 TCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG----TTGATCTTCAACAGGTAG 550 Query 66896 GAGCGTTCCAGGGTCTTGATACCAAAG 66922 || || ||||| ||||||| |||||| Sbjct 549 GACCGCTCCAGAGTCTTGAAGCCAAAG 523 >seq123333 Length=523 Score = 120 bits (132), Expect = 2e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | |||||||| || ||||||| Sbjct 267 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACAGAGGCCAGATGTTTCTATGGTTTCCAGA 208 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | ||||||||||| ||||||| || Sbjct 207 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCGATACATACATCAAGG 148 Query 61376 A 61376 | Sbjct 147 A 147 >seq123334 Length=530 Score = 102 bits (112), Expect = 6e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | |||||||| || ||||||| Sbjct 106 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACAGAGGCCAGATGTTTCTATGGTTTCCAGA 47 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 | ||||||||||| ||||||| ||||||||||| | |||||||| Sbjct 46 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396923266707680