Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq25 123 4e-26 seq10 75.2 2e-11 >seq25 Length=55650406 Score = 123 bits (136), Expect = 4e-26 Identities = 140/181 (77%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||| ||| Sbjct 50197793 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 50197736 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 50197735 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 50197676 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || || || || |||||||||||||||||| Sbjct 50197675 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTG-ATCCATTCAGTGTAGCGCGCGTGC 50197617 Query 179 G 179 | Sbjct 50197616 G 50197616 Score = 87.8 bits (96), Expect = 3e-15 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| || |||||||||||||| |||| || ||||||| |||| ||| Sbjct 14015189 GTACAAAGGTCAGGGACTTAATCAACGCGAGCTTG-TGACCCGTGCTTACTGGGAA-TTC 14015246 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||||| | ||| |||||||| Sbjct 14015247 CTCGTTGATGGGAAACCATTGCAAT 14015271 >seq10 Length=32721116 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/70 (87%), Gaps = 3/70 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| || ||||||| |||||| |||| |||||||||| |||| ||| Sbjct 22734548 GTACAAAGGGCAGAGACTTAATCAACGCAAGCTTG-TGACCCGCGCTTACTGGGAA-TTC 22734491 Query 61 CTCGTTGAAG 70 |||| ||||| Sbjct 22734490 CTCG-TGAAG 22734482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999817875