Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq25 154 6e-35 seq19 84.2 9e-14 >seq25 Length=55650406 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 48723964 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAGGCCAGAGGAAACTCTGGTGGA 48724023 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||||||| ||||||||||||||||| | ||||||||||||||| Sbjct 48724024 GGCCCGTAGCGGTTCTGACGTGCAAATCGATCGTCCGACCTGGGTATAGGGGCGA 48724078 Score = 125 bits (138), Expect = 3e-26 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||||||| ||||||||| | || ||| |||||| | | ||||| |||||||| Sbjct 46215147 AGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATA 46215088 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||||||||| ||||||| |||| ||||| ||||||| ||| || | | Sbjct 46215087 CGGGCATGAGACCGATAGACGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAGA 46215028 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || |||||||| || || ||| || || Sbjct 46215027 GAGAGTTCAAGAGGACGTGAAACCGTCGAGAGGTAAACG 46214989 Score = 102 bits (112), Expect = 3e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||||||||||| |||| || |||||| Sbjct 46214285 AGAGCGTACGTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAGGCCAGA 46214226 Query 614 GGAAACTCTGGTGGAG 629 |||||||||||||||| Sbjct 46214225 GGAAACTCTGGTGGAG 46214210 >seq19 Length=33548221 Score = 84.2 bits (92), Expect = 9e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||||||||||||| || ||||| ||| | ||||||||| ||||| | Sbjct 1701421 GCCAGAGGAAACTCTGGTGGAGGCCCGTAGCGGCCCTGACATGCAAATCGGTCGTCCGAC 1701362 Query 668 TTGGGTATAGGGGCGA 683 ||||||||| ||||| Sbjct 1701361 CTGGGTATAGAGGCGA 1701346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999463750