Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq25 188 2e-45 seq18 127 6e-27 seq6 127 6e-27 seq19 100 9e-19 seq7 96.9 1e-17 seq20 84.2 7e-14 seq5 84.2 7e-14 seq2 80.6 8e-13 >seq25 Length=55650406 Score = 188 bits (208), Expect = 2e-45 Identities = 138/158 (87%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 31383828 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCC 31383887 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 ||||||||| | |||||||||||| || | ||||||||||||||||||||||||| | Sbjct 31383888 GTTACCCGTGGTCACCATGGTAGGCACGTAGCGTACCATCGAAAGTTGATAGGGCAGACA 31383947 Query 219 TTTGAATGAACCATCGCCGGCTC--AAGGCCATGCGAT 254 || |||||| | |||||| | | | ||||| ||||| Sbjct 31383948 TTCGAATGAGACGTCGCCGCCACGGAGGGCCA-GCGAT 31383984 Score = 185 bits (204), Expect = 3e-44 Identities = 143/167 (86%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---CTATCAA 397 || ||||||||||||||||||||| |||| |||||||| ||| | |||| | ||||| Sbjct 31384154 TTTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTA--ACGGTAGAGCGATCAA 31384211 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 31384212 AGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTT 31384271 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 31384272 AGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 31384317 >seq18 Length=29603586 Score = 127 bits (140), Expect = 6e-27 Identities = 122/154 (79%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| || Sbjct 29355617 AATTTGCGC--CTGCTGCCTTCCTTTGATGTGGTAGCCGTTTCTCAGGTTCCCTCTCTGG 29355674 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||| || ||||||| |||| || | | | ||| |||| || |||||| Sbjct 29355675 AATCGAATCCCAATTCCCTGTTA-CCATGGTCATCATAGTAGATATGTAGAGTACCATAC 29355733 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 || ||| |||||||||| ||| ||||| |||| Sbjct 29355734 AACGTTAATAGGGCAGACATTCAAATGAGACATC 29355767 >seq6 Length=24035278 Score = 127 bits (140), Expect = 6e-27 Identities = 92/105 (88%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| |||||||||||||||||||||| |||||||||||||| | | | ||||||| Sbjct 23706212 AAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACCGGCCGTGTGTACTTAG 23706271 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 23706272 ACTTGCATGGCTTAATCTTTGAGACAAGCATATG-GTACTGGCAG 23706315 >seq19 Length=33548221 Score = 100 bits (110), Expect = 9e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| |||||| | ||||||||||||| ||||||||||| ||| | || | |||||||| Sbjct 13585425 AACCATAACTCACTTAATGAGCCATTTGCAGTTTCACTATATCGCCTGTGTGTACTTAGA 13585366 Query 461 CATGCATGGCTTAATCTTTGAGACA 485 | ||||||||||||||||||||||| Sbjct 13585365 CTTGCATGGCTTAATCTTTGAGACA 13585341 >seq7 Length=23593460 Score = 96.9 bits (106), Expect = 1e-17 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 ||| |||| ||||||||||||||||||||||| | | | |||||| || ||| || Sbjct 19530395 TGACTTAAAGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAAACTCGCAAGG 19530454 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||| ||| Sbjct 19530455 CTTAATCTTTGAGACAAGCATATGA-TACTGACAG 19530488 >seq20 Length=31600912 Score = 84.2 bits (92), Expect = 7e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||| |||||||||||||||||||||||||||||||| | | ||||||||| || Sbjct 20453844 ATAAGTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCATGTGTACTTAGACTTG 20453903 Query 465 CATGGCTTAATCTT 478 |||||||||||||| Sbjct 20453904 CATGGCTTAATCTT 20453917 >seq5 Length=26266306 Score = 84.2 bits (92), Expect = 7e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 |||||||||||||||||||| | | |||| ||||| | | | | || |||||| |||| Sbjct 3362259 AACTGATTTAATGAGCCATTTGTAATTTCTTTGTATTGGCTACATGTATTTAGACTTGCA 3362200 Query 467 TGGCTTAATCTTTGAGACAAGCAT 490 ||||||||||||||| | |||||| Sbjct 3362199 TGGCTTAATCTTTGAAATAAGCAT 3362176 >seq2 Length=25629008 Score = 80.6 bits (88), Expect = 8e-13 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | | | || ||| ||| ||| ||||| | ||| ||||| Sbjct 2580869 TACTCATTCCAATTACAGGGCATCCAATGAGTCCTTTATTGTTATTTTTCATCAATACCT 2580810 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| || |||| ||| ||||| ||||||| ||||| |||||||||| |||| | Sbjct 2580809 CCCCAAGTTGGGAGTGGTTAATT-----GCCTGCTCCCTTCAGTGGATGTGGTGGCCGAT 2580755 Query 121 T 121 | Sbjct 2580754 T 2580754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399622400