Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10 246 2e-60 seq7 129 5e-25 >seq10 Length=32721116 Score = 246 bits (272), Expect = 2e-60 Identities = 986/1525 (65%), Gaps = 57/1525 (4%) Strand=Plus/Plus Query 65416 GTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 |||| | |||| | |||||||| |||||||| || | ||| ||||||||| || Sbjct 10503502 GTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGT 10503561 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | | || | ||| || ||||||| || || ||||| || || || || |||||||| Sbjct 10503562 GTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGG 10503621 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || | || || ||| | || |||| | | || || | || | ||| Sbjct 10503622 CGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCA 10503681 Query 65596 GTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGAT 65655 || ||| | ||| ||| || | || | ||||| || | || ||| | || | Sbjct 10503682 GTCCCAAA--GGTCGGTCGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCCCTT 10503735 Query 65656 ACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT 65715 ||| | || || || | | | ||||| || ||| ||| || | ||||| Sbjct 10503736 GCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCT 10503795 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 || ||| || ||||| || ||||||||||| || | || || | || || Sbjct 10503796 GGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTC 10503855 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 || ||| |||| | |||||||| || | |||||||||||| || || || || Sbjct 10503856 GGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGAT 10503915 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGA 65894 ||||| || | || ||| |||||| ||||| || ||||| || |||||||| |||| Sbjct 10503916 CCCGATCGGCCTGTGGCGCTTGTTGGAA-GTCTCAGCTTCAGGAACCGGGTAGTAGTTGA 10503974 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTT 65951 | ||||| || || | || | |||| | | | | ||| | || | | Sbjct 10503975 TGTCGATGATCTTGTTGAGGTT---TTTCACAATTACCTTGGTGACGGAGGCCAGCTTCT 10504031 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 ||| || ||| | || || || ||| || ||| ||| ||||| | Sbjct 10504032 TGAAGTCGAAA------GTCCGCTCTGGCGTGACGTACATG------TTG---AGGGCGA 10504076 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || ||||||||||| || | |||||| ||| ||||| || | || |||| Sbjct 10504077 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | || || ||||| |||||||||| ||||| || || ||||| || ||||| || | Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||||| || || ||||| || |||||||| |||||||||| ||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCA-- 10504254 Query 66192 GAGC-GC-GTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCG---TA 66246 |||| || | ||||||||| | | | || |||| | ||| | || || | || Sbjct 10504255 GAGCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTT--CCTTC-TCATATTTGGTGTA 10504311 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 ||| | ||||| || ||||| ||| ||| | ||||||| | |||||||| Sbjct 10504312 GAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACAT 10504371 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGG 66364 || ||||| || | || ||| ||| ||| || || ||||| ||||| | | Sbjct 10504372 CAAGGACCAGTCCTGGT--TGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAG 10504429 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAG 66423 |||||||| || || | |||| |||||||| | || ||| || || || || || Sbjct 10504430 GCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAG 10504488 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| || || | |||| |||||||| |||||||| |||||||| | || | || Sbjct 10504489 GAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTT 10504548 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 | ||| || ||||||||||| |||||| |||||| | || | || |||||| || | Sbjct 10504549 GTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAA 10504608 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAA 66602 |||||| || ||||| |||||||| ||||| | ||| ||| | || || | | Sbjct 10504609 CCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC-CGTCGATCGGATGCAGCTCA 10504667 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGA 66662 | || || || || || || | ||| || ||| ||||| | || || | Sbjct 10504668 CCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGT 10504727 Query 66663 ATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGG 66720 | ||||| || ||| ||| |||| |||| || ||| |||| || || || || || Sbjct 10504728 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGAC--AGCTGCGG 10504785 Query 66721 TTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACAT 66780 | || |||| ||||||||| || | ||||| || || | | |||| Sbjct 10504786 CCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAG 10504845 Query 66781 GTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATC 66839 | ||||| ||||||| | | || || |||| | || |||||||| | | ||| | Sbjct 10504846 GAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACAC-CC 10504904 Query 66840 GCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC--TTGATATGCATTAAGTAGGA 66897 ||| || | || || || || ||| ||| | ||| ||||| | || | |||||| Sbjct 10504905 TCATGAGCATGTGCTGCGGTCGCTCGGCCA--CTTTCCCGTTGATCTTCAGCAGGTAGGA 10504962 Query 66898 GCGTTCCAGGGTCTTGATACCAAAG 66922 || ||||| ||||||| || ||| Sbjct 10504963 ACGCTCCAGAGTCTTGAAGCCGAAG 10504987 >seq7 Length=23593460 Score = 129 bits (142), Expect = 5e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 3930813 TGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGA 3930872 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || || || || ||||||| || Sbjct 3930873 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATTGACACCTACATCAAGG 3930932 Query 61376 A 61376 | Sbjct 3930933 A 3930933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 || || |||| || || | || ||||| | || ||| ||| ||||| ||||| |||| Sbjct 3931197 GAGTGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCT 3931256 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 | ||| ||||||| | || || ||||||||||||||||||||||| ||| | || | Sbjct 3931257 TCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCC 3931316 Query 61610 GCGACGAGG 61618 | ||||||| Sbjct 3931317 GAGACGAGG 3931325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 3929502 GAAAACCCTCGACGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 3929561 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 3929562 AAGAAGGCAGAGGCCTCCTTCTGGACGGCAGAGGAGGT 3929599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567878866000