Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq18 320 2e-85 >seq18 Length=80077792 Score = 320 bits (354), Expect = 2e-85 Identities = 224/252 (89%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTAC-CGTCTTCGCA 59 |||| ||||||| |||||||||||||||||||||||||| || |||| | ||| |||||| Sbjct 60304852 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCAACTTCCACGTTTTCGCA 60304911 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| | Sbjct 60304912 CGGACCTGTGTTTTTAATAAACAGTCGCTTCCCTCTCTCCTCTGCGACCACCACCAGC-C 60304970 Query 120 AACACGTCGTTC---ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || || || || || | ||| ||||||||||||||||||||||| |||||||| Sbjct 60304971 AATTCGCTGTCAGCAACTAGTAATGGTCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGC 60305030 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60305031 CGAGTTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 60305090 Query 237 CGGTTTACGGTA 248 |||||| ||||| Sbjct 60305091 CGGTTTCCGGTA 60305102 Score = 282 bits (312), Expect = 6e-74 Identities = 221/257 (86%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTAC--CGTCTTCGC 58 |||| ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct 59563768 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCGACTTGCAACGTCTTCGC 59563827 Query 59 ACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC-CACCA-G 116 ||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||| | | Sbjct 59563828 ACGGACCTGTGTTTTTAATAAACAGTCGCTTCCCTCACTTCTCTGCGGCCACACACAACG 59563887 Query 117 CTCAAC--ACGTCGTTCAC--CAGCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCAT 171 | || | || | | | | ||| |||| ||||||||||||||||||||||| ||| Sbjct 59563888 CACACCGCACAAGGGTGATTGCCGCACATGGCCCCCCTTCTCCCGAAGTTACGGGGGCAT 59563947 Query 172 TTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231 |||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| ||||||| Sbjct 59563948 TTTGCCGAGTTCCTTAACCATAGTTCACCCGAACGCCTTAGTATCCTCAACCAGACCACC 59564007 Query 232 TGTGTCGGTTTACGGTA 248 ||||||||||| ||||| Sbjct 59564008 TGTGTCGGTTTCCGGTA 59564024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399831825