Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq18 123 6e-26 >seq18 Length=80077792 Score = 123 bits (136), Expect = 6e-26 Identities = 174/240 (73%), Gaps = 16/240 (7%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT--TCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 60304853 TTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCAACTTCCACGTTTTCGCAC 60304912 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 | ||||||||||||||||||||||| | || ||| ||||| || ||| Sbjct 60304913 GGACCTGTGTTTTTAATAAACAGTCGCTTCCCTCTCTCCTCTGCGACCACCACCAGC--- 60304969 Query 313 CGGAGCAAGTC-CT-TCACC--CT--CACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 ||| || || ||| | || | || | ||||||||||||||||||| | | Sbjct 60304970 -----CAATTCGCTGTCAGCAACTAGTAATGGTCCCCCTTCTCCCGAAGTTACGGGGGCA 60305024 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||||| |||||||| || ||||| | | | |||||| |||||||||||| ||||| Sbjct 60305025 TTTTGCCGAGTTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCAC 60305084 Score = 114 bits (126), Expect = 3e-23 Identities = 172/239 (72%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT---TCGTGTTTGCA 251 |||||||||| ||||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 59563769 TTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCGACTTGCAACGTCTTCGCA 59563828 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCATGA-GC 309 | ||||||||||||||||||||||| | | | ||| || || || | || Sbjct 59563829 CGGACCTGTGTTTTTAATAAACAGTCGCTTCCCTCACTTCTCTGCGGCCACACACAACGC 59563888 Query 310 TTACGGAGCAA--GTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 || | ||| || || | | || ||| | ||||||||||||||||||| | | | Sbjct 59563889 ACACCGCACAAGGGTGATTGCCGCACA-TGGCCCCCCTTCTCCCGAAGTTACGGGGGCAT 59563947 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||| |||||||| || ||||| | | | |||||| |||| ||| ||| ||||| Sbjct 59563948 TTTGCCGAGTTCCTTAACCATAGTTCACCCGAACGCCTTAGTATCCTCAACCAGACCAC 59564006 Score = 87.8 bits (96), Expect = 5e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || | | ||||||||| | | || ||| |||||||| | ||||| Sbjct 59563533 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTATGGTTGAGACAGCAGGGAAGTCGTT 59563592 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 108 |||||||||||||||||||||||||||||||||||| Sbjct 59563593 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 59563628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799684800