Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq18 343 3e-92 seq4 279 9e-73 seq6 266 6e-69 seq10 203 6e-50 seq3 194 3e-47 seq23 113 8e-23 seq11 105 1e-20 seq22 82.4 1e-13 seq25 73.4 7e-11 seq16 73.4 7e-11 >seq18 Length=80077792 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 66411434 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 66411493 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 66411494 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 66411553 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 66411554 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 66411613 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 66411614 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 66411673 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 66411674 TGAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 66411728 Score = 271 bits (300), Expect = 1e-70 Identities = 238/295 (81%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | |||| ||||||||||||||| | |||| Sbjct 22116410 TACTGAGCAGGATTACTATTGTAACAACACATTATCAATAGGGTAAAACTAACATCTCTC 22116351 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||| | ||| || |||||||||| ||||||||||||| |||| | Sbjct 22116350 ACAACGGTCTAAACCCGGTTCATGTCCCCTATTAGTAGGTGAACAATCCATTGCTTGGTG 22116291 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | ||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct 22116290 AGTTCTGCTTCACAATGATAGGAAGAGCCAACATTGAAGGATCAAAAAGCGACGTCGCTA 22116231 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 22116230 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 22116171 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||| | ||| |||||||| Sbjct 22116170 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTTAGGGTCTGTATTCA 22116116 Score = 140 bits (154), Expect = 6e-31 Identities = 80/82 (98%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 22293545 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTAT 22293486 Query 92 TAGTGGGTGAACAATCCAACGC 113 |||||||||||||||||||||| Sbjct 22293485 TAGTGGGTGAACAATCCAACGC 22293464 Score = 127 bits (140), Expect = 3e-27 Identities = 82/90 (91%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 57539848 GGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGA 57539789 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGC 186 | ||||||||||| |||||||||||||||| Sbjct 57539788 ATGATCAAAAAGCGACGTCGCTATGAACGC 57539759 Score = 78.8 bits (86), Expect = 2e-12 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | ||||||||||||||||||||||||||| Sbjct 55062674 TACTGAGCAGGATTACTATTGCAACAACACATTATCAGTAGGGTAAAACTAACCTGTCTC 55062733 Query 60 ATGACGGTCTAAACCCAG 77 | |||||||||||||||| Sbjct 55062734 ACGACGGTCTAAACCCAG 55062751 >seq4 Length=29445952 Score = 279 bits (308), Expect = 9e-73 Identities = 219/262 (84%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 20130270 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATC 20130329 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| ||| || ||||| ||||||||||||| ||| Sbjct 20130330 AGTGGGTGAACAATCCAACGCTTGGTGAAATCAGCTTCACGATGATAGGAAGAGTTGACG 20130389 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| || Sbjct 20130390 TCGAAGGATCAAAAAGCGACGTCGGTATGAATGCTTGGCCGCCACAAGCCAGTTATCTCT 20130449 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 | || ||| |||||| |||||| || | ||| | | | | |||||||| ||||| Sbjct 20130450 GCGGAAACCTTTCTGACACCTCCTGCTTAAAACCCCAAAAGTCAGAAGGATCGTGAGGCC 20130509 Query 273 ACACTTTCATGGTTTGTATTCA 294 | || ||| || |||||||| Sbjct 20130510 CCGCTGTCACGGCCTGTATTCA 20130531 Score = 253 bits (280), Expect = 3e-65 Identities = 212/262 (81%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 || || |||||||||||||||||||||||| ||||||||||||||||| Sbjct 3190541 ATAAGCAGGGTAAAACTAACCTGTCTCATGTT-----------AGCTCACGTTCCCTATT 3190589 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3190590 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTGACAATGATAGGAAGAGCCGACA 3190649 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || |||||||||||| |||||||||||||||||| || ||||| |||||||||||||| Sbjct 3190650 TCAAAGGATCAAAAACTGACGTCGCTATGAACGCTTTGCCGCCACGAGCCAGTTATCCCT 3190709 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 3190710 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCC 3190769 Query 273 ACACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 3190770 CCGCTTTCACGGTCTGTATTCA 3190791 >seq6 Length=22489619 Score = 266 bits (294), Expect = 6e-69 Identities = 182/204 (89%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 17234959 ATCAGTAGGATAAAACTAACCTGTCTCACGTTGGTCTAAACCCAGCTCACGTTCCCTATT 17234900 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| Sbjct 17234899 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGACGACG 17234840 Query 153 TC--GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||| |||||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 17234839 TCAAAAAGGACCAAAAAGCGACGTCGCTGTGAACGCTTGGCCGCCACGAGCCAGTTATCC 17234780 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| ||| || Sbjct 17234779 CTGTGGTAACTTTTCTGACACATC 17234756 >seq10 Length=29643077 Score = 203 bits (224), Expect = 6e-50 Identities = 127/137 (93%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 11435205 TTAGTGGATGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 11435264 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| Sbjct 11435265 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTCATCC 11435324 Query 211 CTGTGGTAACTTTTCTG 227 ||||||||||||||||| Sbjct 11435325 CTGTGGTAACTTTTCTG 11435341 Score = 80.6 bits (88), Expect = 5e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 |||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||| Sbjct 11992671 CTCACGTTCCCTATTAGTGGGT-AACAATCCAACACTTGGTGAATTCTGCTTCACAATGA 11992613 Query 138 TAGGAA 143 |||||| Sbjct 11992612 TAGGAA 11992607 >seq3 Length=26115117 Score = 194 bits (214), Expect = 3e-47 Identities = 160/194 (82%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||| Sbjct 949384 CATCAGTAGGGCAAAACTAACCTGTCTCAC--CTGTCTAAACCCAGCTCTCGTTCCCTAT 949441 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||| |||||||||||||||| ||| || | || || | ||||||| Sbjct 949442 TAGTGGCGGAACAATCCAACGCTTGGTGAA----GCGTTGGATTGTTCCCTCCAGCCGAC 949497 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||| |||| ||| |||||||| ||| || ||||||||||| Sbjct 949498 ATCGAAGGATCAAAAAGCGACGCCGCTCTGAGCGCTTGGCCGCCGCAGCCCAGTTATCCC 949557 Query 212 TGTGGTAACTTTTC 225 |||||||||||||| Sbjct 949558 TGTGGTAACTTTTC 949571 >seq23 Length=25141513 Score = 113 bits (124), Expect = 8e-23 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 3221405 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTATT 3221464 Query 93 AGTGGGT 99 ||||||| Sbjct 3221465 AGTGGGT 3221471 >seq11 Length=33594876 Score = 105 bits (116), Expect = 1e-20 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 15123560 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACGTTCTAAACCCAGCTCACGTTCCCTA 15123619 Query 91 TTAGTG 96 |||||| Sbjct 15123620 TTAGTG 15123625 >seq22 Length=23629796 Score = 82.4 bits (90), Expect = 1e-13 Identities = 81/107 (76%), Gaps = 12/107 (11%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| ||||| |||||||||||||| | |||||| ||||||||||||| Sbjct 19808217 ATCAGAAGGGTGAAACTAACCTGTCT------------ACCCCAGCACACGTTCCCTATT 19808264 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATA 139 ||||||| ||| | ||||| ||| |||||||||||| |||||| Sbjct 19808265 AGTGGGTAAACCAACCAACCCTTGGTGAATTCTGCTTCACAATGATA 19808311 Score = 77.0 bits (84), Expect = 6e-12 Identities = 77/99 (78%), Gaps = 6/99 (6%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA---T 91 || || ||||||||||||||||||||||||| | ||| ||| || | |||| || | Sbjct 19053180 CATTAAGGTAAAACTAACCTGTCTCATGACGATGTAAGCCCGCCTAAAGTTCAATACTGT 19053121 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||| |||||| |||| || |||||||||||| Sbjct 19053120 TAGTGGG---ACAATCAAACGATTTGTGAATTCTGCTTC 19053085 >seq25 Length=32766887 Score = 73.4 bits (80), Expect = 7e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||| |||||||||||| | ||||||||||||||||||||| || ||||| Sbjct 17108053 GAATTCTGCTTAACAATGATAGGAAGAACTGACATCGAAGGATCAAAAAGCGACTTCGCT 17107994 >seq16 Length=24388307 Score = 73.4 bits (80), Expect = 7e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 || ||||||||||||| ||||||| ||| || |||||||| |||||||| ||||||| | Sbjct 13609887 ATGAGTAGGGTAAAACAAACCTGTTTCACAACAGTCTAAACTCAGCTCACATTCCCTACT 13609828 Query 93 AGTGG 97 |||| Sbjct 13609827 GGTGG 13609823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399786400