Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq18 140 6e-31 >seq18 Length=80077792 Score = 140 bits (154), Expect = 6e-31 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | | ||| ||||| ||||||||||| |||||| ||| ||||||||||| Sbjct 59563347 GGGACAGTGCCTGGTGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAATGGTAACGGAGGC 59563288 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCACAGTGCAAAGGCAA-AAGGG 228 |||||||| | ||||| |||||| ||| || || | | |||| || |||| ||||| Sbjct 59563287 GCCCAAAGGTTCCCTCGGCTTGGTTGGTAATCAGGTTTTAGAGTGTAAGTGCAATAAGGG 59563228 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | ||||||| ||||| | || |||||| |||||| ||| || ||||||||| Sbjct 59563227 AGCTTGACTGTGACACTGACGGGTGGAGCAGGTGCGAAAGCAGGGACTAGTGATCCGGCA 59563168 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| | ||||||| ||||||||||| ||||| ||||||| Sbjct 59563167 TCAACGTGTGGGTGTGGTGTCGCTCAACGGATAAAAGGTACCCCGGGGATA 59563117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982399754400