Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq18 360 4e-97 >seq18 Length=80077792 Score = 360 bits (398), Expect = 4e-97 Identities = 331/414 (80%), Gaps = 16/414 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| |||||||||||| ||| ||| | ||| ||| Sbjct 59564353 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTCACCCTGGGAAGATTAGCTTCACC 59564412 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||| | | ||||| || | || |||| || ||||||||||||||| Sbjct 59564413 CAGGAACCCTTAGTCATCCGGCGAACACGTTTTCCACATGTTTTTCGCTACTCATGCCTG 59564472 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||||| |||||||||| || | | | ||||||| | | |||||| Sbjct 59564473 CATTCTCACTCGCACACACTCCACCAC-CACTTCCGTGACAGCTTCTCAGCGTGCACGAC 59564531 Query 181 GCTCCCCTACCCAAC-CACACAG---------GTTGCCACAGCTTCGGCGGATAACTT-- 228 ||||||||||||||| ||||| |||||| | | |||||||| |||| Sbjct 59564532 GCTCCCCTACCCAACACACACCAAAAATGTGTGTTGCCGCGGTTTCGGCGGTGTACTTTA 59564591 Query 229 -AAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287 ||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 59564592 TAAGCCCCACTACATTATCGGCGCATCACCACTTAACCAGTGAGCTATTACGCACTCTTT 59564651 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 |||||||||||||||| ||||||||||||||| ||||| ||| | ||| |||||| || Sbjct 59564652 CAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTTCGCGATGACACCTCCTTTTCC 59564711 Query 348 ACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || ||| | ||||||||||||| | || |||||||||||||||||||||| Sbjct 59564712 ACTCAG-CACACCCTTAGGGGCCTTAACCGACGATCTGGGCTGTTTCCCTCTCG 59564764 Score = 167 bits (184), Expect = 5e-39 Identities = 160/200 (80%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||||||||||||| ||| | | || || Sbjct 67485592 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTCACCCAGGGCGGACTAGCCTGGCC 67485651 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| | |||||| ||| ||| ||||| ||||||||||||||| Sbjct 67485652 CTGGAACCCTTGGTCATTCGGCGCTAGGGCTTCTCACCCTAGTATCGCTACTCATGCCTG 67485711 Query 121 CATTCTCACTCGCATCAAC-TCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 ||||||||||| | || | ||||||| ||||||||| ||||| || || || Sbjct 67485712 CATTCTCACTC-CCGCACCGTCCACCA-GCAGTCACCCACAGGCTTCCCCCGGTGCAGGA 67485769 Query 180 CGCTCCCCTACCCAACCACA 199 |||||||||| ||| ||||| Sbjct 67485770 CGCTCCCCTA-CCACCCACA 67485788 Score = 84.2 bits (92), Expect = 5e-14 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| || |||||||||||||||| || ||| | ||||||||||||||| | ||||||| Sbjct 67485945 CGCGACCGCACATCCTTTCCCACTTAG-CACACGCTTAGGGGCCTTAGCCGGCGATCTGG 67486003 Query 386 GCTGTTTCCCTCTCG 400 ||||||||||||||| Sbjct 67486004 GCTGTTTCCCTCTCG 67486018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599705600