Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq18 405 2e-110 seq5 250 8e-64 seq12 210 7e-52 seq24 178 4e-42 seq2 134 5e-29 seq13 87.8 6e-15 >seq18 Length=80077792 Score = 405 bits (448), Expect = 2e-110 Identities = 359/443 (81%), Gaps = 18/443 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 66411761 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 66411820 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 66411821 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 66411880 Query 127 G-GCCC---GCGAAGGAC-----CTTAACGCCAGAA---AATGGTCGGTGAAGACCAG-- 172 |||| |||| || ||| ||||||||| | | | | || | | Sbjct 66411881 ACGCCCCGCGCGACGGCGGGGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCC 66411940 Query 173 -TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCG 230 | |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct 66411941 TTCCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCG 66412000 Query 231 AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 | ||||||||||| |||||||||||| ||| ||||||| | | |||||||||||| Sbjct 66412001 GGGC--CTCCCACTTATCCTACACCTCTCATGTCTCTTCACAATGCCAGACTAGAGTCAA 66412058 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 66412059 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTT 66412118 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||| ||| | || |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 66412119 CGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAAT 66412178 Query 411 TAGATGACGAGGCATTTGGCTAC 433 ||||||||||||||||||||||| Sbjct 66412179 TAGATGACGAGGCATTTGGCTAC 66412201 Score = 244 bits (270), Expect = 3e-62 Identities = 150/160 (94%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||| |||||||||| ||||||||||| || ||||||| ||||||||||||||||||||| Sbjct 43136250 GAGTGAAGCTCAACATGGTCTTCTTTCTCCACTGATTCTGCCAAGCCCGTTCCCTTGGCT 43136309 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| Sbjct 43136310 GTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGT 43136369 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 |||||||||||||||||||||||||||||||||||||||| Sbjct 43136370 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 43136409 Score = 100 bits (110), Expect = 9e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 66416422 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 66416481 Score = 75.2 bits (82), Expect = 4e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 32910269 GGACAGTGGGAATCTTGTTCATCCATTCGTGCGCGTCACTAATTAGATG 32910317 >seq5 Length=28616086 Score = 250 bits (276), Expect = 8e-64 Identities = 190/222 (86%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCCCACTTATTCTACACCTC 257 || ||||| ||||||||||||||| ||| | | ||| |||||| || | ||||||||| Sbjct 18325655 ACAATAAGAGTAGTGGTATTTCACCGGCGGCTGGAAC--CTCCCAGTTGTCCTACACCTC 18325598 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 ||| ||| ||||||| ||| |||||||||||||| ||||| |||||||||||||| Sbjct 18325597 TCATGTCTCTTCACAATGTCAGACTAGAGTCAAGC-----AGGGTTTTCTTTCCCCGCTG 18325543 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||| |||||||||||| ||||||||||||||||||| ||| | || |||||||||||| Sbjct 18325542 ATTCTGCCAAGCCCGTTTCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGT 18325483 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||| ||||||||||||||||||||||||||||| || Sbjct 18325482 AATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGGCG 18325441 >seq12 Length=31653010 Score = 210 bits (232), Expect = 7e-52 Identities = 134/146 (92%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 11014750 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGG 11014809 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||| ||| | || ||||||||||||||||||| || ||||||| ||| |||||||| Sbjct 11014810 TTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCATTCATCCATTTATGTGCGTCACT 11014869 Query 408 AATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||| | ||| Sbjct 11014870 AATTAGATGACGAGGCATTTAGTTAC 11014895 Score = 140 bits (154), Expect = 1e-30 Identities = 89/97 (92%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| Sbjct 25561985 GAGTCAAGCTCAACAGGATCTTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCCCTTGGCT 25562044 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 ||||||||||| ||| | || |||||||||||||||| Sbjct 25562045 GTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAAT 25562081 >seq24 Length=19721749 Score = 178 bits (196), Expect = 4e-42 Identities = 138/163 (85%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 || |||||||| ||| ||||||||||||||||| |||||| ||||| |||||| | ||| Sbjct 15970991 CTTGAGTCAAGGTCAGCAGGGTCTTCTTTCCCCACTGATTATGCCAACCCCGTTTCATTG 15971050 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||| | || ||| | || |||||||||||||||||||||| ||| |||||| | Sbjct 15971051 TCTGTGGTCTTTCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCGTCCTTTCATGTG 15971110 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||||||||||||| |||||||||| |||| | ||| Sbjct 15971111 CGTCACTAATTAGATGACGAGTCATTTGGCTA-CTTACGCGAG 15971152 >seq2 Length=25664663 Score = 134 bits (148), Expect = 5e-29 Identities = 102/118 (86%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTC 257 |||||||| ||||||||||| ||| ||| ||| | | ||||||||||| ||||||||| Sbjct 6260823 ACGATAAGAGTAGTGGTATTACACCGGCGGCCGGAGC--CTCCCACTTATCCTACACCTC 6260766 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 ||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 6260765 TCATGTCTCTTCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 6260708 Score = 118 bits (130), Expect = 3e-24 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||| |||||| |||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 20870302 AAGTTCAACACTGTCTTCTTTCCCCGTTTATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 20870243 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGA 378 |||||| ||| | || |||||||||||||| Sbjct 20870242 TTCGCTGGATGGGAGTTAGGGACAGTGGGA 20870213 >seq13 Length=27080333 Score = 87.8 bits (96), Expect = 6e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26984102 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 26984149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199591200