Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq18 526 7e-147 >seq18 Length=80077792 Score = 526 bits (582), Expect = 7e-147 Identities = 373/422 (88%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 8 GTAAGTCTCGCAGTCAAGCTCCCTTGT-GCACTTACACTC-ACCACCTGATTGCCAACCA 65 || ||| || ||||||||||||||| | |||||||||||| | |||||||| ||||||| Sbjct 59563208 GTCAGTGTCACAGTCAAGCTCCCTTATTGCACTTACACTCTAAAACCTGATTACCAACCA 59563267 Query 66 GGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAA 125 || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 59563268 AGCCGAGGGAACCTTTGGGCGCCTCCGTTACCATTTAGGAGG-CAACCGCCCCAGTTAAA 59563326 Query 126 CTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGG 185 ||||||||||||||||||||| || || ||||| || ||| ||||||| ||| || Sbjct 59563327 CTACCCACCAGGCACTGTCCCAAAACCCGATCAGGGCCCACAGTTAGATGCACACAACAA 59563386 Query 186 TCAGAGTGGTATTTCAACAA-CGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 ||||||||||||||| ||| |||||||||| ||||||||||| || || |||||| Sbjct 59563387 CCAGAGTGGTATTTCACCAATCGACTCCACACCCACTAGCGTGAATGCTTCCACGTCTCC 59563446 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCGGGG 304 |||||||||||||||| | ||| | | |||||||||||||||||| |||||||||||| Sbjct 59563447 CACCTATCCTACACAAGCTGCAGCACACACCAATACCAAGCTATAGTAAAGGTCCCGGGG 59563506 Query 305 TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCT 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59563507 TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCT 59563566 Query 365 GTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 424 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 59563567 ATGGTTGAGACAGCAGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 59563626 Query 425 GG 426 || Sbjct 59563627 GG 59563628 Score = 131 bits (144), Expect = 6e-28 Identities = 79/82 (96%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 484 ACCCGCCTCACACACCACGTGG-TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGC 542 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 59563729 ACCCGCCTCACACACCACCAGGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGC 59563788 Query 543 AGGCGTCAGTCCGTATACCTCG 564 |||||||||||||||||||||| Sbjct 59563789 AGGCGTCAGTCCGTATACCTCG 59563810 Score = 111 bits (122), Expect = 5e-22 Identities = 72/78 (92%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 486 CCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGG 545 ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 60304818 CCGCCTCGCACACCAAA--GTGTGCTCACGGGTCCTCTTAACCTTCCAGCACCGGGCAGG 60304875 Query 546 CGTCAGTCCGTATACCTC 563 |||||||||||||||||| Sbjct 60304876 CGTCAGTCCGTATACCTC 60304893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399574400