Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 127 6e-27 seq11 96.9 1e-17 seq12 89.7 2e-15 seq2 89.7 2e-15 >seq10 Length=29643077 Score = 127 bits (140), Expect = 6e-27 Identities = 122/154 (79%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||| |||||||||||||| |||||||||||||||||||||||||||| || || Sbjct 29393808 AATTTGCGC--CTGCTGCCTTCCTTTGATGTGGTAGCCGTTTCTCAGGCTCCCTGTCTGG 29393865 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||| || ||||||| |||| || | | | | | |||| || |||||| Sbjct 29393866 AATCGAATCCCAATTCCCTGTTA-CCATGGTCATCTTAGTAGATATGTAGAGTACCATAC 29393924 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 |||||| |||||||||| ||| ||||| |||| Sbjct 29393925 AAAGTTAATAGGGCAGACATTCAAATGAGACATC 29393958 >seq11 Length=33594876 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||| ||||||||||||| |||||||||| ||| | || | ||||||||| || Sbjct 13599271 ATAACTGACTTAATGAGCCATTTGCAGTTTCACAATATTGCCTGTGTGTACTTAGACTTG 13599212 Query 465 CATGGCTTAATCTTTGAGACA 485 ||||||||||||||||||||| Sbjct 13599211 CATGGCTTAATCTTTGAGACA 13599191 >seq12 Length=31653010 Score = 89.7 bits (98), Expect = 2e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||| |||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 20485090 ATAAGTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTG 20485149 Query 465 CATGGCTTAATCTT 478 |||||||||||||| Sbjct 20485150 CATGGCTTAATCTT 20485163 >seq2 Length=25664663 Score = 89.7 bits (98), Expect = 2e-15 Identities = 90/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || | || ||| ||| ||| ||||| | ||| ||||| Sbjct 2584439 TACTCATTCCAATTACAGGGCCTCCAATGAGTCCTTTATTGTTATTTTTCATCAATACCT 2584380 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||||| || |||| ||||||||| ||||||| ||||| |||||||||| || Sbjct 2584379 CCCCGAGTTGGGACTGGGTAATT-----GCCTGCTCCCTTCAGTGGATGTGGTGGC 2584329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399622400