Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_022791.1 Length=37375 Score E Sequences producing significant alignments: (Bits) Value seq18 592 4e-165 >seq18 Length=80077792 Score = 592 bits (656), Expect = 4e-165 Identities = 698/940 (74%), Gaps = 16/940 (2%) Strand=Plus/Plus Query 32419 GGATAAGAGCCGTCTGAGTGTACGTACCAGTAGCCAGTGCCATTTTTCTGCCAGCCTGTT 32478 ||||||||||| ||||| | | |||| |||||||| |||||| |||| || | | Sbjct 30080955 GGATAAGAGCCATCTGACTCCTCCCACCACCAGCCAGTGGCATTTTGACGCCATCCAGCT 30081014 Query 32479 GCAGCGCTCAAGCCGTTTTCGATGTCTTGCTTAAACTGTTCACGGCTAATGCCCCATTTA 32538 ||| | || ||| || || | |||||||| |||||||| ||||||||||| Sbjct 30081015 TCAGTAGAGATACCACCTTCAATATCATTTTTAAACTGCTCACGGCTGATGCCCCATTTT 30081074 Query 32539 GCAAGATATGGATAAGGGTCAACGTGGTCTGAGTGGTTGTTTGGTTGGTTATTGGTACAG 32598 |||||||| ||||| || ||||||||||| |||| ||| |||||||||| || || Sbjct 30081075 GCAAGATAAGGATACGGATCAACGTGGTCAGAGTAGTTTCGAGGTTGGTTATATGTGCAA 30081134 Query 32599 TATTCATGCGTCTTGATACCTGCCAAGTCGTCTGTATCAAGAGTCTTCGGCAAGCCTGCT 32658 |||| |||||||||||| ||||| | | ||| | || || || || || | |||||| Sbjct 30081135 TATTGATGCGTCTTGATTCCTGCTAGGCTGTCAGAGTCCAGCGTTTTAGGAATCCCTGCT 30081194 Query 32659 TCGTCCGCTAGATTGCGTAGCAATTCGATATAGAGGCGATAGTCAGCCATAAACTCTTCC 32718 || || || || ||||| | | || | |||||| ||| ||| ||| ||||||||| Sbjct 30081195 TCATCAGCGAGGTTGCGCAAAAGCTCAACATAGAGCTTATAATCACGCATGAACTCTTCC 30081254 Query 32719 TTAGTTGAATGGCTTTCAATCAGTTCAACCGCTGCATAGGTCTCAGCATTCCAACCGCCC 32778 || || |||||| ||||||| |||||| | || ||| | |||||||| || Sbjct 30081255 TTGGTCTCATGGCTCTCAATCAATTCAACTTGACCGTATCCTTCAACGTTCCAACCACCG 30081314 Query 32779 CCAACATCCCAACTTCCGTTGT-----TCACAGGTCCTACCTGCATGATGCGGCCGTTCC 32833 || ||||| || ||| ||| | ||||| ||||| | || || |||| Sbjct 30081315 CCTACATCATAAGCTCCCATGTCTGTGTACCAGGTT-----TGCATCACACGACCATTCC 30081369 Query 32834 CAACAACGTGCGAGAAAAAACCTAATTCTG--GGTCTTTCCGCCAGTGATAATCCGCTTC 32891 | ||||||||||||||||| ||| | || |||| | ||| ||| || |||||||| Sbjct 30081370 CGACAACGTGCGAGAAAAATCCTGAATCAACAGGTCGT--CGCATGTGGTAGTCCGCTTC 30081427 Query 32892 ATTCTGTACGGTTGAGTTGCGGTTACCTGTTGAGTGAGCATGTACTTGTCGATAAGGCTG 32951 ||| || ||||||| || | || ||||||||||| ||||| | ||||| || || || Sbjct 30081428 ATTTTGAGCGGTTGAATTTGGATTTCCTGTTGAGTGCGCATGAATTTGTCTGTATGGTTG 30081487 Query 32952 CACCCCAACCTGTGGCAAGCCTGTACGTAGTCTGTTTCTATCGATATCCATTCCCTATCG 33011 | |||||||| || | | | || | ||||||| || | || |||||||| || | Sbjct 30081488 TTCTCCAACCTGGGGAAGGTCAGTCCTTAGTCTGCTTGTGTCAATATCCATGAT-TACTG 30081546 Query 33012 TCCTTTCCATGCGTCATTCATCTGCTTCACTGCTGACTCTACGAAGGTGTCTAAGTCTTT 33071 ||||||||| || |||||||||||||| ||||||||||| || || || |||||||| || Sbjct 30081547 TCCTTTCCACGCATCATTCATCTGCTTAACTGCTGACTCGACAAATGTATCTAAGTCATT 30081606 Query 33072 GTCAGTCATACTAATATTGTATTTTGTAAGCTCAGCACGGACTTTAGCACGAGCCTGCTC 33131 ||||||||| || ||||||||||| || ||||| ||||| | ||||| || || || || Sbjct 30081607 GTCAGTCATGCTGATATTGTATTTGGTTAGCTCGGCACGAATTTTAGTGCGTGCTTGTTC 30081666 Query 33132 CAGCTTTTCATCGCCTTTAAAGCCAGTCTCTGAGGTAACCTGCTCAACGGCATTTACTGC 33191 || || || |||||||| ||||||| || | | ||||||||||| ||||| ||||| Sbjct 30081667 AAGTTTCTCTTCGCCTTTGTAGCCAGTTTCGGCTGCGACCTGCTCAACAGCATTAACTGC 30081726 Query 33192 GTTCTTGGCCAAGATTTCAACGATTTTGATGGTCTTTTCTCCACCTTTTTGAACCAGGTA 33251 |||||| ||||||||||| ||||||||||| ||||||||||| ||||||| || ||||| Sbjct 30081727 GTTCTTAGCCAAGATTTCGACGATTTTGATAGTCTTTTCTCCGCCTTTTTTGACAAGGTA 30081786 Query 33252 GTCCTTGACTGCCCTAACTACAACCCCTGCCAAAACGACTAGGATGCTGATTGCTCCATT 33311 ||| ||||| ||| ||||| | | ||| || || ||||||||||| | |||||| || Sbjct 30081787 GTCTTTGACCGCCTTAACTGCGATACCTAGCATAATAACTAGGATGCTAACTGCTCCGTT 30081846 Query 33312 AGTAATGATTTCAGTAATTTGTTGCATTTGTTATTCTCCT 33351 | || |||||| | |||||||||| |||| ||||||| Sbjct 30081847 TGCGATAATTTCATTGATTTGTTGCA-TTGTCTTTCTCCT 30081885 Score = 208 bits (230), Expect = 2e-49 Identities = 159/188 (85%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20033 CCCTCAATTTTACCTTGCTCGTAGCCCTCTCGCCATTTTGCATGACTAAAATCCTGTTCA 20092 ||||||| |||| |||||||| || || |||||||||||| ||||||| ||| | ||| Sbjct 30105264 CCCTCAAACCTACCCTGCTCGTACCCTTCACGCCATTTTGCACGACTAAAGTCCCGCTCA 30105323 Query 20093 AATTCGCTCATGATAGCCTTTAACCAAACCTCTCTATCATGCAATGGCAATTCTCGCAAT 20152 ||||| | |||||||||||||| |||||| || | || |||||||||| |||||||||| Sbjct 30105324 AATTCACCCATGATAGCCTTTAGCCAAACTTCACGGTCGTGCAATGGCAGTTCTCGCAAT 30105383 Query 20153 CGTGCTAGTATGTTCTTTACGTAGCGTGGAGCTTCATCTGCGTGACCTATCTCTGGTTCG 20212 | |||||||| ||| || ||||||||||||||||| |||||||||||| | ||||||||| Sbjct 30105384 CTTGCTAGTACGTTTTTGACGTAGCGTGGAGCTTCGTCTGCGTGACCTGTTTCTGGTTCG 30105443 Query 20213 TCTAGTTG 20220 | ||||| Sbjct 30105444 TAAAGTTG 30105451 Score = 199 bits (220), Expect = 9e-47 Identities = 353/510 (69%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 32496 TTCGATGTCTTGCTTAAACTGTTCACGGCTAATGCCCCATTTAGCAAGATATGGATAAGG 32555 ||| || |||| |||||||||||| | |||||||||||||| ||||| |||||||| || Sbjct 50177293 TTCAATATCTTTCTTAAACTGTTCTCTACTAATGCCCCATTTTGCAAGGTATGGATAGGG 50177234 Query 32556 GTCAACGTGGTCTGAGTGGTTGTTTGGTTGGTTATTGGTACAGTATTCATGCGTCTTGAT 32615 || || || || || ||||||||||| | ||||| ||| ||| || || || Sbjct 50177233 ATCTACATGATCACTTCCATTATTTGGTTGGTTGTAAGTACAAAATTGATGAGTTTTAAT 50177174 Query 32616 ACCTGCCAAGTCGTCT-GTATCAAGAGTCTTCGGCAAGCCTGCTTCGTCCGCTAGATTGC 32674 || | |||| | || | ||| ||||| || || | || || ||||| |||| | | Sbjct 50177173 CCCAG-CAAGACTACTAGAATCTAGAGTTTTAGGGATTCCAGCCTCGTCAGCTAACTCAC 50177115 Query 32675 GTAGCAATTCGATATAGAGGCGATAGTCAGCCATAAACTCTTCCTTAGTTGAATGGCTTT 32734 ||| | | || ||| || ||||| || ||| || ||||| |||| | ||| |||| Sbjct 50177114 GTAATAGCTTGACATAAAGTCGATAATCTCTCATGAATTCTTCTTTAGATTCATGACTTT 50177055 Query 32735 CAATCAGTTCAACCGCTGCATAGGTCTCAGCATTCCAACCGCCCCCAACATCCCAACTTC 32794 | || |||||||| || || ||| ||||||| ||||| |||||||| || | Sbjct 50177054 CTATTAGTTCAACTTGAGCGTAACCTTCAACATTCCATCCGCCGCCAACATCATAAGCAC 50176995 Query 32795 CGTTGTTCACAGGTCCTACCTGCATGATGCGGCCGTTCCCAACAACGTGCGAGAAAAAAC 32854 | || || | |||||||| || || ||||| || || || |||||||| | Sbjct 50176994 CTCGGTCTACTAACCAAGTTTGCATGATACGACCATTCCCTACCACATGGGAGAAAAATC 50176935 Query 32855 CTAATTC--TGGGTCTTTCCGCCAGTGATAATCCGCTTCATTCTGTACGGTTGAGTTGCG 32912 || | || || | ||| || ||||| |||||||| ||| | || ||||| | Sbjct 50176934 CTGACTCAACTGGAC--GACGCATATGGTAATCTGCTTCATTTTGTGCCGTAGAGTTAGG 50176877 Query 32913 GTTACCTGTTGAGTGAGCATGTACTTGTCGATAAGGCTGCACCCCAACCTGTGGCAAGCC 32972 || ||||||||||||||||| ||||||||||| || ||| | || | || || | Sbjct 50176876 ATTTCCTGTTGAGTGAGCATGAACTTGTCGATAGGGTTGCTCACCGATTTGAGGAAGATT 50176817 Query 32973 TGTACGTAGTCTGTTTCTATCGATATCCAT 33002 ||| |||| ||| || |||| | ||||| Sbjct 50176816 TGTTCGTAATCTACTTTTATCAACTTCCAT 50176787 Score = 190 bits (210), Expect = 5e-44 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24177 ACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATA 24236 |||||||| |||||||||||||| || ||||| || || || ||||| | |||||| Sbjct 59385893 ACACGTTGTCCTTGCTGGTTATCGTAACTACGAGTCTGGATACGGCCTGTGATCCCGATA 59385952 Query 24237 AGAGAGCCTTTTTTAGCCCAATTAGCAAGATTTTCAGCTAACTGTCTCCAGATAACGCAA 24296 |||||||||||||||||||| ||||||||||||||||| || | ||| || ||| | Sbjct 59385953 AGAGAGCCTTTTTTAGCCCAGTTAGCAAGATTTTCAGCCTGTTGACGCCACATCACGACA 59386012 Query 24297 TTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAAATGGACGGTTTACAGCAAGA 24356 |||||||||||||||||||| || ||| | ||||||| | ||||||||| |||||| Sbjct 59386013 TTGATAAAATCAGCCTCACGTTCGCCATTTTGACTCTTAAACGTACGGTTTACTGCAAGA 59386072 Query 24357 GTAAACGTAGCAACCGCAATATTAGATTGCGTGTA 24391 ||||| || ||||| || | ||| ||| | || || Sbjct 59386073 GTAAAAGTCGCAACTGCTACATTTGATGGGGTATA 59386107 Score = 181 bits (200), Expect = 3e-41 Identities = 264/370 (71%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 33392 CTTTTACAATCGGCTGAAAAAGAGTAACATTTCCTTTTAATTTGCGGTAATTTTCAATGA 33451 |||||| ||| || | |||||| || ||| ||||||| ||| | || || ||||| | Sbjct 50176735 CTTTTAAAATTGGTTTAAAAAGTAGAATATTCCCTTTTACTTTTTGATAGTTCTCAATTA 50176676 Query 33452 GAGATTGAAAAGTAAATGCGATGTACCCGAGACAGATTGAATGCAAGAATACAAAACCTG 33511 | ||||| ||||||||| | | ||| |||| | | || |||| || || | ||| || | Sbjct 50176675 GCGATTGGAAAGTAAATACTAGGTATCCGATATAAATAGAATACAGAAACATAAACCCAG 50176616 Query 33512 TCTTTTCAGGCAACAAAACGGACGCCGGAATGAGGATCATCAGTAA---GAGAACCCCTG 33568 | ||||||||||||||||| ||| |||||| | || | |||||| | || |||| Sbjct 50176615 TTTTTTCAGGCAACAAAACAGACATCGGAATCA--AT-AACAGTAACATAAAAATCCCTA 50176559 Query 33569 AAATCTTACGAAGGAGCCCGTTAATGCCGATTTTGCTCTTGTACTCGATGTCAGGATTGA 33628 | | || |||| | || || || || ||| | ||||| ||||| | |||||||| | Sbjct 50176558 AGACTTTTCGAATTAATCCATTGATTCCAATTCTACTCTTATACTCAACATCAGGATTTA 50176499 Query 33629 TAATCGCCGCAATCGTCCCTGTGACAAAATCAATGATTTCCATTGAGACAATCAGTGTTA 33688 ||| ||||||| || |||| ||||||||| |||||||| |||||| | | || Sbjct 50176498 CAATGGCCGCAAATGTTCCTGATGCAAAATCAACAATTTCCATGATGACAATTAACGCTA 50176439 Query 33689 GAGCGTACAAGACCAAACCATCTTCAGTCTGTACGACACTTCTTAGAAAATTGAAAAATT 33748 || ||||| | | |||||||| || | | || |||||| |||||| || |||| Sbjct 50176438 ACGCATACAAAATAAGCCCATCTTCTGTTTCGATGAGCTTTCTTAAAAAATTAAACAATT 50176379 Query 33749 CAATTTTCAT 33758 |||| | ||| Sbjct 50176378 CAATATCCAT 50176369 Score = 145 bits (160), Expect = 2e-30 Identities = 107/122 (88%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 30479 AAAAATCCCCACACTCGTCATCGCCAAATCTTGAGTGTGAGGAAATCATGTATAGGAAAC 30538 ||||||||||||||||| | |||||||| |||||| |||||| ||| ||||| ||||| Sbjct 30117585 AAAAATCCCCACACTCGCCTTCGCCAAAATTTGAGTATGAGGATATCCAGTATAAGAAAC 30117644 Query 30539 AACCATTCAAAAGGTCGTTTTCTTATACCCATTTTATCAAAAAAGTGAGGT-AAAATCAA 30597 ||||||| ||||||||| ||| |||||||||||||||||| ||| |||||| |||||||| Sbjct 30117645 AACCATTAAAAAGGTCGCTTTTTTATACCCATTTTATCAAGAAA-TGAGGTAAAAATCAA 30117703 Query 30598 TG 30599 || Sbjct 30117704 TG 30117705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119478364529850