Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq18 237 5e-58 >seq18 Length=80077792 Score = 237 bits (262), Expect = 5e-58 Identities = 560/834 (67%), Gaps = 20/834 (2%) Strand=Plus/Minus Query 19063 GATGAACCTATTTACATCCTAGCGGGTACGTCGTCGACTTCGATACAGAATAACGTGTTG 19122 |||||||| || || || | || || ||||| || ||||||||||| ||||| | | Sbjct 30099915 GATGAACCGATGTATATTTTGGCTGGGACGTCTTCAACTTCGATACAAAATAATATTATC 30099856 Query 19123 CAAGAGCTTTATAATAAATACGGATTTGAGCCTAGATATGACAAACATGGCTCTTTTGTT 19182 ||||| || ||||| | | | ||||||| | |||||||||||| || | ||| | Sbjct 30099855 CAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGACAAACACGGAGCGTTTACT 30099796 Query 19183 TTTTGTGGAGTTAAAGTTGTCCAAGTTTACACTGGTTCAATTAGTGGTCTTAAACGTGCC 19242 |||| ||||| || ||| | |||||||| |||||||||||| ||| | ||||| || Sbjct 30099795 CTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAATTTCAGGTTTAAAACGAGCT 30099736 Query 19243 CGCGGTTTTACAGCGTTCGGCGCTTATGTTAATGAGGCATCACTTGCTAACGAGGTTGTT 19302 || ||||| ||||| || || || ||||| || |||||||| | || || || || Sbjct 30099735 CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTG 30099676 Query 19303 TTCAAGGAGATTATATCACGGTGCTCAGGTGAGGGGGCTCGTATAGTTTGGGACAGTAAC 19362 ||||| || || || ||||| || || || ||||| || || || |||||||| |||||| Sbjct 30099675 TTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGGGATAGTAAC 30099616 Query 19363 CCAGACAACCCTAACCATTGGCTTAATCGTGATTACATCGGCAAGAATGATGGCAAAATT 19422 ||||||| ||| | ||| ||||| | || ||||| ||| | || | | || Sbjct 30099615 CCAGACATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGACGATATGATC 30099556 Query 19423 ATAGATTTTAGTTTCAAGCTTGATGACAATACGTTCCTGTCAAAACGCTATATCGATTCT 19482 ||||| ||| ||||||||| ||||| ||||| ||| |||| | | || ||| | Sbjct 30099555 ATAGACTTTCATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATACCGCGAAAAT 30099496 Query 19483 ATTAAGGCAGCTACGCCAAAGGGTAAATTCTACTCTAGAGATATTCTAGGACTCTGGACA 19542 || ||| || || ||| ||| ||| || |||| || || || | ||| | Sbjct 30099495 ATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGGTTTGTGGGCG 30099436 Query 19543 GTAGCAGAGGGATCTATATACGCTGATTATGACAGTAAGATACACG-TAGTTGATGAATT 19601 | ||||| | |||| ||||| | || ||| | | | | || ||| | | Sbjct 30099435 ACTGGTGAGGGCGTTGTATATCGTGATTTT---AGCGAGA-ATATGTTTGTGGATAACGT 30099380 Query 19602 GCCAGAA-ATGAAACGCTA--CTTTGGTGGCATCGACTGGGGATATACTCACTACGGATC 19658 |||||| || ||| | || || ||| | |||||||| ||| |||| || || Sbjct 30099379 ACCAGAAGATATAACTAAAGTCTATGCTGGTGTTGACTGGGGGTATGAACACTTTGGCTC 30099320 Query 19659 AATCGTGATTGTTGGCGAGGGTGTAGATGG--CAATTACTATCTCGTTGACGGTGTAGCG 19716 || || |||| || || ||| || || || ||| || | || | || Sbjct 30099319 TATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTT--TATATCTTAGAGGAACACGCT 30099262 Query 19717 GCACAATTCAAAGAGATAGACTGGTGGGTAGAACAAGCT--AGAAAGCTAACCAACATCT 19774 |||| ||||||||| |||| |||||||| | ||| ||||| | || || | Sbjct 30099261 CATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGAAATCAAA--AAACGAT 30099204 Query 19775 ACGGTAATATGCCATTTTATGCTGATAGTGCCCGCCCTGAACACGTAGCAAGATTTGAGA 19834 | || ||||| | |||| || ||||| || || ||||||||||| || |||||| ||| Sbjct 30099203 ATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAACACGTTGCTAGATTTCAGA 30099144 Query 19835 GTGAAGGATT--TGATATTAGTAACGCTAACAAGTCAGTGATAGCTGGCATCGA 19886 | || | | || ||| |||||||||||| | || | |||| ||||| Sbjct 30099143 GAGAGCAACTGAAGACATT--TAACGCTAACAAAGCGGTCTTGTCTGGTATCGA 30099092 Score = 129 bits (142), Expect = 2e-25 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 12465 GCAGTCGCATCTTTCAGTCTTGCGGTTAACCGTAATTTTAAAGACGCTAAC-GGAGAGCG 12523 ||||| || |||| | |||||| || ||||||| ||||| || | || || || || Sbjct 59386089 GCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAA-GAGTCAAAATGGCGAACG 59386031 Query 12524 TGAAACTGACTTTATTAACTGT-GTCATTTGGCGACAACAGGCTGAAAATTTGGCTAACT 12582 ||| |||| ||||| || ||| || || ||||| ||||||||||||||| | ||||||| Sbjct 59386030 TGAGGCTGATTTTATCAA-TGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACT 59385972 Query 12583 GGGCCAAAAAAGGGGCATTGATTGGCATTACTGGACGCATTCAAACACGTAGCTACGAGA 12642 |||| |||||||| | | || || || || || || || || || ||||| ||||| | Sbjct 59385971 GGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATA 59385912 Query 12643 ATCAGCAAGGTCAACGAGT 12661 | |||||||| ||||| || Sbjct 59385911 ACCAGCAAGGACAACGTGT 59385893 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 47187 ATTGTAGAGGCTTTCCAAACGGTCTTTCCTGAGGTTTTGGGGGGCTATGAAAAAATTCGC 47246 || ||| ||||||| | || ||||||||||| ||||||| |||||||| ||||| Sbjct 66146329 ATCGTAAAGGCTTTTAAGGAAGTTTTTCCTGAGGTCTTGGGGGCTTATGAAAAGATTCGT 66146270 Query 47247 TTCAAGGGCCTTGATTTTGAGTCAGACCATCTTTATGGACAAGAGGCCGCTGATACCTTC 47306 || || || || || | |||||| | | || ||||||| | || || | ||| || Sbjct 66146269 TTTAAAGGTCTAGACTATGAGTCTGCCTATGTTTATGGTGAGGAAGCGCCAGATTATTTT 66146210 Query 47307 ACTATCTTGGAGAATGGGGTAACTTATGAAGTTTTTCTAAATGATGGGCTAATGACAGGG 47366 ||| | | |||||||| || ||| | || ||| | |||||||| | |||||||| Sbjct 66146209 ACTGTTCTTGAGAATGGCGTGCTCTATCAGGTCTTTATGAATGATGGCTTGATGACAGGA 66146150 Query 47367 ATTTTTCTTGACCAGCATGA 47386 ||||| || ||||||||||| Sbjct 66146149 ATTTTCCTAGACCAGCATGA 66146130 Score = 89.7 bits (98), Expect = 2e-13 Identities = 269/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576 ||| ||||||||| || | ||||||||| || | ||| |||||||||| || | | Sbjct 64029762 CAACTACCCAATCGTCTCCATCGAAGATCCGCTGCAGGAAGACGACTGGGAGGGCTACAC 64029821 Query 2577 ATCTCTTACTGAACGTC-TTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAA 2635 | || || | || | |||| | ||||| || | || || |||||||||||||| | Sbjct 64029822 CGCCCTCACCGC-CGCCATTGGCGACAAAGTGCAGATCGTCGGCGACGACTTCTTCGTCA 64029880 Query 2636 CTAACACTGCTTACCTTGAAAAAGGTATTGCAGAA-CACGCTGCTAACTCAATCCTTATC 2694 | ||| | || ||| |||| |||| |||| | || || ||| | | || | Sbjct 64029881 CCAACCCCGCCCGCCTGCGTGAAGGCATTG-AGAAGAAGGCCGCCAACGCCCTGCTGGTG 64029939 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGG-CGAAAGA 2753 || |||||||| |||||||| | || ||||| || ||||| | || ||| | | | Sbjct 64029940 AAGGTTAACCAGATCGGTACCCTCACCGAAACCTTCGACGCCGTTGAGCTGGCCCATCGC 64029999 Query 2754 AGCTGGATA-CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || | || || | | || ||||| || || ||||| || || | || |||| Sbjct 64030000 AAC-GGCTACCGCACCA-TGATGTCCCACCGCTCCGGCGAAACCGAGGACACCACCATCG 64030057 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 |||| | || ||||| ||| || || || ||||| ||| | | || | | Sbjct 64030058 CTGACCTCGCCGTTGCCCTCAACTGCGGCCAGATCAAGACCGGTGCTCCCGCCCGCTCCG 64030117 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA--AGACC 2914 | || | || || |||||||| |||| || ||||| ||||| Sbjct 64030118 AGCGCGTGGCCAAGTACAACCAGCTGCTGCGCATCGAGCAGACC 64030161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156038353676100