Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6684 98.7 4e-18 seq6660 98.7 4e-18 seq82 96.9 1e-17 >seq6684 Length=2370 Score = 98.7 bits (108), Expect = 4e-18 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| |||| || |||||| | | ||||| ||||||| Sbjct 2088 GAGTCGTGTTGCTTGAGAATGCAGCGCTAATCAGGTGGTAAACTCCATCTAAGGCTAAAT 2147 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||||| |||| ||||||| | || ||||| ||||||| |||||| | Sbjct 2148 ACGAATGTGAGACCAATAGAAGACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAAG 2207 Query 160 AGAGAGTTAAAAAGCACGTGAAAT 183 ||||||||||| | |||||||| Sbjct 2208 AGAGAGTTAAACATTGCGTGAAAT 2231 >seq6660 Length=2398 Score = 98.7 bits (108), Expect = 4e-18 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| |||| || |||||| | | ||||| ||||||| Sbjct 2115 GAGTCGTGTTGCTTGAGAATGCAGCGCTAATCAGGTGGTAAACTCCATCTAAGGCTAAAT 2174 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || |||||| |||| ||||||| | || ||||| ||||||| ||| || | Sbjct 2175 ATGAATGTGAGACCAATAGAAGACAAGTACCGCGAGGGAAAGTTGAAAAGAACTCTGAAG 2234 Query 160 AGAGAGTTAAAAAGCACGTGAAAT 183 ||||||||||| | |||||||| Sbjct 2235 AGAGAGTTAAACATTGCGTGAAAT 2258 >seq82 Length=1900248 Score = 96.9 bits (106), Expect = 1e-17 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 1212207 GCCAGAGGAAACTCTGGTGGAGGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGAC 1212266 Query 668 TTGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 1212267 CTGGGTATAGGGGCGA 1212282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079557443600