Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1477 320 3e-85 seq9 306 6e-81 seq145 275 1e-71 seq600 269 5e-70 seq6 244 2e-62 seq30 203 6e-50 seq474 179 6e-43 seq605 143 5e-32 seq142 114 2e-23 seq84 91.5 3e-16 seq2583 87.8 3e-15 seq356 82.4 1e-13 seq2764 80.6 5e-13 seq93 77.0 6e-12 seq10 73.4 7e-11 >seq1477 Length=37152 Score = 320 bits (354), Expect = 3e-85 Identities = 228/262 (87%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 30484 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 30543 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 30544 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 30603 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| |||||||||| ||||||||| ||||||||||| | |||||| Sbjct 30604 TCGAAGGATCAAAAAGCGACGTCGCTATCAACGCTTGGACGCCACAAGCCAATAATCCCT 30663 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 30664 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCC 30723 Query 273 ACACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 30724 CCGCTTTCACGGTCTGTATTCA 30745 >seq9 Length=4789368 Score = 306 bits (338), Expect = 6e-81 Identities = 226/264 (86%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3126790 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 3126849 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||| || Sbjct 3126850 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTTGA 3126909 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | ||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| Sbjct 3126910 CGTCGAAGGATCAAAAAGCGACGTCGGTATGAATGCTTGGCCGCCACAAGCCAGTTATCC 3126969 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||| || ||| |||||| |||||| || | ||| | | | |||||||| ||| Sbjct 3126970 CTGCGGAAACCTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 3127029 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || | |||||| ||| |||||||| Sbjct 3127030 CCCCGCTTTCACGGTCTGTATTCA 3127053 >seq145 Length=1315088 Score = 275 bits (304), Expect = 1e-71 Identities = 184/204 (90%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 691282 ATCAGTAGGATAAAACTAACCTGTCTCACATTGGTCTAAACCCAGCTCACGTTCCCTATT 691223 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| Sbjct 691222 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGACGACG 691163 Query 153 TC--GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 691162 TCAAAAAGGACCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 691103 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 691102 CTGTGGTAACTTTTCTGACACCTC 691079 >seq600 Length=152837 Score = 269 bits (298), Expect = 5e-70 Identities = 217/262 (83%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||| ||||||||||||||| | ||||| ||||||||||||| | ||| || ||||||| Sbjct 24610 ATCAATAGGGTAAAACTAACATCTCTCACAACGGTCTAAACCCGGTTCATGTCCCCTATT 24551 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| ||||||||||||| |||| || ||||||||| ||||||||||||||| ||| Sbjct 24550 AGTAGGTGAACAATCCATTGCTTGGTGAGTTCTGCTTCACAATGATAGGAAGAGCCAACA 24491 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 24490 CTGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 24431 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 24430 GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCC 24371 Query 273 ACACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 24370 CCGCTTTCACGGTCTGTATTCA 24349 >seq6 Length=5778625 Score = 244 bits (270), Expect = 2e-62 Identities = 201/247 (81%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2288806 AGGGTAAAACTAACCTGTCTCATGTT-----------AGCTCACGTTCCCTATTAGTGGG 2288854 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 2288855 TGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAG 2288914 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||| |||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 2288915 GATCAAAATCTGACGTCGCTATGAACGCCTTGCCGCCACAAGCCAGTTATCCCTGTGGTA 2288974 Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTT 278 ||||||||| |||||| || | ||| | | | |||||||| ||||| | ||| Sbjct 2288975 ACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTT 2289034 Query 279 TCATGGT 285 ||| ||| Sbjct 2289035 TCACGGT 2289041 >seq30 Length=3044448 Score = 203 bits (224), Expect = 6e-50 Identities = 126/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 2115758 AGTGGATGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 2115817 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 2115818 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 2115877 Query 213 GTGGTAACTTTTCTG 227 ||||||||||||||| Sbjct 2115878 GTGGTAACTTTTCTG 2115892 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 |||||||||||||||||||||| ||||||||||| ||| ||||| |||||| |||| Sbjct 2599208 CTCACGTTCCCTATTAGTGGGT-AACAATCCAACACTTGGTGAATTTTGCTTCACAATGA 2599150 Query 138 TAGGAA 143 |||||| Sbjct 2599149 TAGGAA 2599144 >seq474 Length=294066 Score = 179 bits (198), Expect = 6e-43 Identities = 157/194 (81%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||| |||||||||||||||| |||||| | ||||||||||||||| |||||||||| Sbjct 3111 CATCACTAGGGTAAAACTAACCAGTCTCAC--CTGTCTAAACCCAGCTCTCGTTCCCTAT 3168 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||| ||||||||||| |||| ||| || | || || | ||||||| Sbjct 3169 TAGTGGGGGAACAATCCAAAGCTTGGTGAA----GCGTTGGATTGTTCCCTCCAGCCGAC 3224 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||| |||||||||||| ||| |||| |||||||||||| ||| || ||||||| | | Sbjct 3225 ATCGACGGATCAAAAAGCGACGCCGCTCTGAACGCTTGGCCGCCGCAGCCCAGTTAACTC 3284 Query 212 TGTGGTAACTTTTC 225 |||||||||||||| Sbjct 3285 TGTGGTAACTTTTC 3298 >seq605 Length=146795 Score = 143 bits (158), Expect = 5e-32 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 21912 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 21853 Query 92 TAGTGGGTGAACAATCCAACGC 113 |||||||||||||||||||||| Sbjct 21852 TAGTGGGTGAACAATCCAACGC 21831 >seq142 Length=1353999 Score = 114 bits (126), Expect = 2e-23 Identities = 65/66 (98%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 967624 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 967565 Query 91 TTAGTG 96 |||||| Sbjct 967564 TTAGTG 967559 >seq84 Length=1874375 Score = 91.5 bits (100), Expect = 3e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 424685 ACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 424737 >seq2583 Length=13369 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||| |||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 12470 TACAAAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 12529 Query 60 ATGACGGTCTAAACCCAGCT 79 | |||||||||||||||||| Sbjct 12530 ACGACGGTCTAAACCCAGCT 12549 >seq356 Length=508119 Score = 82.4 bits (90), Expect = 1e-13 Identities = 81/107 (76%), Gaps = 12/107 (11%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||| | ||||| |||||||||||||| | |||||| ||||||||||||| Sbjct 402834 ATCGGAAGGGTGAAACTAACCTGTCT------------ACCCCAGCACACGTTCCCTATT 402881 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATA 139 ||||||| ||| ||||||| ||| |||||||||||| |||||| Sbjct 402882 AGTGGGTAAACCATCCAACCCTTGGTGAATTCTGCTTCACAATGATA 402928 >seq2764 Length=13979 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 6666 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 6725 Query 60 ATGACGGTCTAAACCC 75 | |||||||||||||| Sbjct 6726 ACGACGGTCTAAACCC 6741 >seq93 Length=1786077 Score = 77.0 bits (84), Expect = 6e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||| Sbjct 56160 GAATTCTGCTTAACAATGATAGGAAGAACTGACATCGAAGGATCAAAAAGCGACGTCGCT 56219 >seq10 Length=4582771 Score = 73.4 bits (80), Expect = 7e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCC 75 |||||||||||||||||||||||||||||| ||||||||||| || Sbjct 70275 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAATCC 70231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854223720192