Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq14 259 2e-66 seq2335 248 3e-63 seq4991 233 6e-59 seq247 215 2e-53 seq239 194 5e-47 seq60 174 5e-41 seq49 140 1e-30 seq289 136 1e-29 seq2310 122 3e-25 seq5777 114 4e-23 seq1493 114 4e-23 seq879 80.6 9e-13 >seq14 Length=4112360 Score = 259 bits (286), Expect = 2e-66 Identities = 192/222 (86%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCCCACTTATTCTACACCTC 257 || ||||| ||||||||||||||| ||| | | ||| |||||| || | ||||||||| Sbjct 3478104 ACAATAAGAGTAGTGGTATTTCACCGGCGGCTGGAAC--CTCCCAGTTGTCCTACACCTC 3478047 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 ||| ||| ||||||| ||| |||||||||||||| ||||| |||||||||||||| Sbjct 3478046 TCATGTCTCTTCACAATGTCAGACTAGAGTCAAGC-----AGGGTTTTCTTTCCCCGCTG 3477992 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||| |||||||||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 3477991 ATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGG 3477932 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||| ||||||||||||||||||||||||||||| || Sbjct 3477931 AATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGGCG 3477890 >seq2335 Length=16437 Score = 248 bits (274), Expect = 3e-63 Identities = 146/152 (96%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 13420 CTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 13479 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| ||| | || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 13480 GCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATT 13539 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 |||||||||||||||||||||||||||||||| Sbjct 13540 AGATGACGAGGCATTTGGCTACCTTAAGAGAG 13571 >seq4991 Length=4693 Score = 233 bits (258), Expect = 6e-59 Identities = 169/192 (88%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 202 ATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 ||||| ||||||| |||||| ||| ||| | | ||||||||||| |||||||||||| Sbjct 2825 ATAAGAGTAGTGGC-TTTCACCGGCGGCCGGAGC--CTCCCACTTATCCTACACCTCTCA 2769 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 ||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2768 TGTCTCTTCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 2709 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 | |||||||||||||||||||||||||||||||| ||| | || |||||||||||||||| Sbjct 2708 CTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAAT 2649 Query 381 CTCGTTAATCCA 392 |||||| ||||| Sbjct 2648 CTCGTTCATCCA 2637 >seq247 Length=823891 Score = 215 bits (238), Expect = 2e-53 Identities = 168/205 (82%), Gaps = 23/205 (11%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 744788 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGG 744847 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||| ||| | || ||||||||||||||||||| || ||||||| ||| |||||||| Sbjct 744848 TTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCATTCATCCATTTATGTGCGTCACT 744907 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||||||||||||| |||||||||||||| | |||| Sbjct 744908 AATTAGATGACGAGGCATT--------------------TAGTTACTCCCGCCATATACC 744947 Query 468 CGCGCTTGGTTGA---ATTTCTTCA 489 ||||||| |||| |||||||| Sbjct 744948 CGCGCTTCATTGAGTCTTTTCTTCA 744972 >seq239 Length=844703 Score = 194 bits (214), Expect = 5e-47 Identities = 127/139 (91%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||| Sbjct 337989 AAGCTCAACAGGGTCTTCTTTCCTCGCTGATTCTGCCAAGCCAGTTCCCT-GGCTGTGGT 338047 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||| ||| | || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 338048 TTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTA 338107 Query 409 ATTAGATGACGAGGCATTT 427 ||||||||||| | || || Sbjct 338108 ATTAGATGACGCGACAATT 338126 >seq60 Length=2331243 Score = 174 bits (192), Expect = 5e-41 Identities = 137/163 (84%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 || |||||||| ||| ||||||||||||||||| |||||| ||||| |||||||| ||| Sbjct 289430 CTTGAGTCAAGGTCAGCAGGGTCTTCTTTCCCCACTGATTATGCCAACCCCGTTCCATTG 289371 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||| | || ||| | || |||||||||||||||||||||| ||| ||||| | Sbjct 289370 TCTGTGGTCTTTCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCGTCCTATCATGTG 289311 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 | ||||||||||||||||||| |||||||||| |||| | ||| Sbjct 289310 CATCACTAATTAGATGACGAGTCATTTGGCTA-CTTACGCGAG 289269 >seq49 Length=2505550 Score = 140 bits (154), Expect = 1e-30 Identities = 89/97 (92%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 2478356 GAGTCAAGCTCAACTGGGTCTTCTTTCCCCGCTGATCCTGCCAAGCCCGTTCCCTTGGCT 2478415 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 ||||||||||| ||| | || |||||||| ||||||| Sbjct 2478416 GTGGTTTCGCTGGATGGGAGTTAGGGACAATGGGAAT 2478452 >seq289 Length=681250 Score = 136 bits (150), Expect = 1e-29 Identities = 101/116 (87%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 201 GATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTC 259 |||||| ||||||||||||||| ||| ||| | | ||||||||||| ||||||||||| Sbjct 645830 GATAAGAGTAGTGGTATTTCACCGGCGGCCGGAGC--CTCCCACTTATCCTACACCTCTC 645887 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 | ||| ||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 645888 ATGTCTCTTCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 645943 >seq2310 Length=16955 Score = 122 bits (134), Expect = 3e-25 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3656 AGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAG 3715 Query 422 GCATTTGGCTAC 433 |||||||||||| Sbjct 3716 GCATTTGGCTAC 3727 >seq5777 Length=3430 Score = 114 bits (126), Expect = 4e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||| |||||| |||||||||||||| | |||| |||| |||||||||||||| Sbjct 546 AGAGTCAAGTTCAACACTGTCTTCTTTCCCCGTTTATTCTGCCAGGCCCGTTCCCTTGGT 487 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 |||||||||||| ||| | || | |||||||||||| Sbjct 486 TGTGGTTTCGCTGGATGGGAGTTGGGGACAGTGGGA 451 >seq1493 Length=36536 Score = 114 bits (126), Expect = 4e-23 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 189 AAGTaaaaaaa---CGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACT 244 |||| |||||| ||||||| |||| |||||||||| ||| ||| | | ||||||| Sbjct 33132 AAGTGAAAAAAACCCGATAAGAGTAGCGGTATTTCACCGGCGGCCGGAGC--CTCCCACA 33189 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 | | |||||||||||| ||| ||||||| | | ||| |||||||||||||||||||||| Sbjct 33190 TGTCCTACACCTCTCATGTCTCTTCACAATGCCAGACAAGAGTCAAGCTCAACAGGGTCT 33249 Query 305 TCTTT 309 ||||| Sbjct 33250 TCTTT 33254 >seq879 Length=69918 Score = 80.6 bits (88), Expect = 9e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 14166 GGACAGTGGGAATCTCGTTCATCCATTCATGCACGTCACTAATTAGATG 14214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634862625536