Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2055 185 3e-44 seq494 145 2e-32 seq868 136 1e-29 seq173 104 7e-20 seq311 93.3 1e-16 seq356 86.0 2e-14 seq217 82.4 2e-13 seq318 80.6 8e-13 >seq2055 Length=21616 Score = 185 bits (204), Expect = 3e-44 Identities = 143/167 (86%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---CTATCAA 397 || ||||||||||||||||||||| |||| |||||||| ||| | |||| | ||||| Sbjct 1186 TTTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTA--ACGGTAGAGCGATCAA 1243 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 1244 AGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTT 1303 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1304 AGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1349 Score = 163 bits (180), Expect = 9e-38 Identities = 108/120 (90%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 603 CCTTCCTTGGATGTGGTTGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCC 662 Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||||||||| | | |||||||||||| || | ||||||||||||||||||||| ||| Sbjct 663 CCGTTACCCATGGTCACCATGGTAGGCACGTAGCGTACCATCGAAAGTTGATAGGGGAGA 722 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||||||| |||||| |||||||||||||| |||||||||| ||||| Sbjct 536 TGCCTTCCTTGGGTGTGGTTGCCGTTTCTCAGGCCCCCTCTCCGGGATCGA 586 >seq494 Length=268462 Score = 145 bits (160), Expect = 2e-32 Identities = 126/154 (82%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18694 AATTTGCGC--CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 18751 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||| || ||||||| |||| || | | | ||| |||| || |||||| Sbjct 18752 AATCGAATCCCAATTCCCTGTTA-CCATGGTCATCATAGTAGATATGTAGAGTACCATAC 18810 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 |||||| |||||||||| ||| ||||| |||| Sbjct 18811 AAAGTTAATAGGGCAGACATTCAAATGAGACATC 18844 >seq868 Length=71932 Score = 136 bits (150), Expect = 1e-29 Identities = 94/105 (90%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||||||||||||||||||||||||||||||||| | | | ||||||| Sbjct 17733 AAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAG 17792 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||| |||||||||| Sbjct 17793 ACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 17836 >seq173 Length=1154963 Score = 104 bits (114), Expect = 7e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| |||||||| ||||||||||||| ||||||||||| ||| | || | |||||||| Sbjct 227405 AACCATAACTGACTTAATGAGCCATTTGCAGTTTCACTATATCGCCTGTGTGTACTTAGA 227464 Query 461 CATGCATGGCTTAATCTTTGAGACA 485 | ||||||||||||||||||||||| Sbjct 227465 CTTGCATGGCTTAATCTTTGAGACA 227489 >seq311 Length=621295 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 37951 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTG 38010 Query 465 CATGGCTTAATCTT 478 |||||||||||||| Sbjct 38011 CATGGCTTAATCTT 38024 >seq356 Length=508119 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/113 (77%), Gaps = 9/113 (8%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCG--------CAGTTTCACTGTATAGATTGCTT 451 |||| ||| ||| |||| |||||||||| | || |||||||| | | | Sbjct 154887 AAACTTTAAATGACTTAAAGAGCCATTCGGTACCACTCGGTATCACTGTACCGGCCGTGT 154946 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 154947 GTACTTAAACTTGCATGGCTTAATCTTTGAGACAAGCATATGA-TACTGGCAG 154998 >seq217 Length=930495 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 ||||||||||||||||||||| | | |||| ||||| | | |||| |||||| ||| Sbjct 878798 TAACTGATTTAATGAGCCATTTGTAATTTCTTTGTATTGGCTATGTATATTTAGACTTGC 878857 Query 466 ATGGCTTAATCTTTGAGACAAGCAT 490 |||||||||||||||| | || ||| Sbjct 878858 ATGGCTTAATCTTTGAAATAATCAT 878882 >seq318 Length=614012 Score = 80.6 bits (88), Expect = 8e-13 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || | || ||| ||| ||| ||||| | ||| || || Sbjct 560235 TACTCATTCCAATTACAGGGCCTCCAATGAGTCCTTTATTGTTATTTTTCATCAATATCT 560176 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| || |||| ||| ||||| ||||||| ||||| |||||||||| |||| | Sbjct 560175 CCCCAAGTTGGGAGTGGTTAATT-----GCCTGCTCCCTTCAGTGGATGTGGTGGCCGAT 560121 Query 121 T 121 | Sbjct 560120 T 560120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510088374272