Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq110 237 1e-57 seq233 132 4e-26 >seq110 Length=1641499 Score = 237 bits (262), Expect = 1e-57 Identities = 982/1524 (64%), Gaps = 55/1524 (4%) Strand=Plus/Minus Query 65416 GTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 |||| | |||| || |||||||| |||||||| || | ||| ||||||||| || Sbjct 1622896 GTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGT 1622837 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | | || | ||| || ||||||| || || ||||| || || || || |||||||| Sbjct 1622836 GTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGG 1622777 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || | || || ||| | || |||| | || || | || | ||| Sbjct 1622776 CGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCA 1622717 Query 65596 GTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGAT 65655 || ||| | ||| ||| || | || | ||||| || | || ||| | || | Sbjct 1622716 GTCCCAAA--GGTCGGTCGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCCCTT 1622663 Query 65656 ACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT 65715 ||| | || || || | | | ||||| || ||| ||| || | ||||| Sbjct 1622662 GCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCT 1622603 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 || ||| || ||||| || ||||||||||| || | || || | || || Sbjct 1622602 GGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTC 1622543 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 || ||| |||| | |||||||| || | |||||||||||| || || || || Sbjct 1622542 GGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGAT 1622483 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGA 65894 ||||| || | || ||| |||||| ||||| || ||||| || |||||||| |||| Sbjct 1622482 CCCGATCGGCCTGTGGCGCTTGTTGGAA-GTCTCCGCTTCAGGAACCGGGTAGTAGTTGA 1622424 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTT 65951 | ||||| || || | || | |||| | | | | ||| | || | | Sbjct 1622423 TGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGCCAGCTTCT 1622367 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 ||| || ||| | || || || ||| || ||| ||| ||||| | Sbjct 1622366 TGAAGTCGAAA------GTCCGCTCTGGCGTGACGTACATG------TTG---AGGGCGA 1622322 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || ||||||||||| || | |||||| ||| ||||| || | || |||| Sbjct 1622321 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | || || ||||| |||||||||| ||||| || || ||||| || ||||| || | Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||||| || || ||||| || |||||||| |||||||||| ||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCA-- 1622144 Query 66192 GAGC-GC-GTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCG---TA 66246 |||| || | ||||||||| | | | || |||| | ||| | || || | || Sbjct 1622143 GAGCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTT--CCTTC-TCATATTTGGTGTA 1622087 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 ||| | ||||| || ||||| ||| ||| | ||||| | | |||||||| Sbjct 1622086 GAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACAT 1622027 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGG 66364 || ||||| || | || ||| ||| ||| || || ||||| ||||| | | Sbjct 1622026 CAAGGACCAGTCCTGGT--TGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAG 1621969 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAG 66423 |||||||| || || | |||| |||||||| | || ||| || || || || || Sbjct 1621968 GCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAG 1621910 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||||||||| | |||| |||||||| ||||| || |||||||| | || | || Sbjct 1621909 GAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTT 1621850 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 | ||| || ||||||||||| |||||| |||||| | || | || |||||| || | Sbjct 1621849 GTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAA 1621790 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAAC 66603 |||||| || ||||| |||||||| ||||| | |||| | || || | || Sbjct 1621789 CCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCAC 1621730 Query 66604 ATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAA 66663 || || || || || || | ||| || ||| || || | || || | | Sbjct 1621729 CGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTA 1621670 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGT 66721 ||||| || ||| ||| |||| |||| || ||| |||| || || || || || Sbjct 1621669 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGAC--AGCTGCGGC 1621612 Query 66722 TTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATG 66781 | || |||| ||||||||| || | ||||| || || | | |||| | Sbjct 1621611 CGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGG 1621552 Query 66782 TAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCG 66840 ||||| ||||||| | | || || |||| | || || ||||| | | ||| | Sbjct 1621551 AGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACAC-CCT 1621493 Query 66841 CATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC--TTGATATGCATTAAGTAGGAG 66898 ||| || | || || || || ||| ||| | ||| ||||| | || | |||||| Sbjct 1621492 CATGAGCATGTGCTGCGGTCGCTCGGCCA--CTTTCCCGTTGATCTTCAGCAGGTAGGAA 1621435 Query 66899 CGTTCCAGGGTCTTGATACCAAAG 66922 || ||||| ||||||| || ||| Sbjct 1621434 CGCTCCAGAGTCTTGAAGCCGAAG 1621411 >seq233 Length=880882 Score = 132 bits (146), Expect = 4e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 604495 TGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGA 604436 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 604435 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 604376 Query 61376 A 61376 | Sbjct 604375 A 604375 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 605799 GAAAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 605740 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 605739 AAGAAGGCAGAGGCCTCCTTCTGGACGGCAGAGGAGGT 605702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397468030532480