Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2908 107 1e-21 seq1213 107 1e-21 seq274 104 1e-20 seq1217 95.1 7e-18 seq2331 89.7 3e-16 seq1945 89.7 3e-16 seq273 89.7 3e-16 seq242 89.7 3e-16 seq475 84.2 1e-14 seq2295 75.2 6e-12 seq226 75.2 6e-12 seq262 71.6 8e-11 >seq2908 Length=93689 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 85979 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 86038 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 86039 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 86095 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| ||| Sbjct 65624 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCTG 65683 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 65684 GATCGCTAGTCGGCATAGTTTATGGTCGGATTTACGACGGTATCTGATCGTCTTCGA 65740 >seq1213 Length=529218 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 254021 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 254080 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 254081 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 254137 >seq274 Length=1577701 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 1188331 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 1188272 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||| Sbjct 1188271 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGATATCTGATCGTCTTCGA 1188215 >seq1217 Length=526419 Score = 95.1 bits (104), Expect = 7e-18 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| ||| Sbjct 325171 GAACCCAAAGACTTTGGTTTC-CGGAAGCTGCTCGGCGGGTCATGGAAATAACGCAGCCG 325229 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||||||||| ||||| ||| | ||||||||||||||||||| ||||||| Sbjct 325230 GATTGCTAGTCGGCATTGTTTATGGTCAGAACTACGACGGTATCTGATCATCTTCGA 325286 >seq2331 Length=173507 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| || ||||| |||| Sbjct 80634 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGCACATGGGAATAACGCCGCCG 80575 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||||||||| ||||| ||| ||||||||||||||||||| ||||||| Sbjct 80574 GATTGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCTTCTTCGA 80518 >seq1945 Length=256476 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| ||| Sbjct 20795 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCGGCCG 20854 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||| ||||| ||| |||||| ||||||||||||||||| || Sbjct 20855 GATCGCTAGTCTGCATCGTTTATGGTCGGAACTACGGCGGTATCTGATCGTCTTTGA 20911 >seq273 Length=1578729 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 275408 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 275349 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | ||||| ||||| ||||| ||| |||||||| ||||||||||||||| || Sbjct 275348 GACCGCTAGTAGGCATCGTTTATGGTCGGAACTACGACAGTATCTGATCGTCTTTGA 275292 >seq242 Length=1668502 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| || Sbjct 1261857 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCAGCTG 1261798 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||||||||||||||| ||| ||||||||| |||||||| |||||||| Sbjct 1261797 GATTGCTAGTCGGCATAGTTTATGGTCGGAACTACGACGCTATCTGATTGTCTTCGA 1261741 >seq475 Length=1163320 Score = 84.2 bits (92), Expect = 1e-14 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCC-AAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 |||||| |||||||||| ||| || || ||| || |||| ||||| |||| Sbjct 154588 GAACCCTAAAGACTTTGGTTTTCCGGCAGCTGCTCGGCAGGTCATGGGAATAACGCCGCC 154647 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| | |||||||||||||||||| ||||| || Sbjct 154648 GGATCGCTAGTCGGCATTGTTTATGGTCAGAACTACGACGGTATCTGATTGTCTTTGA 154705 >seq2295 Length=178014 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 |||||| |||| |||| ||||||||||| ||||| ||| |||||| ||||||||||| Sbjct 154526 ATAACACCGCCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGGCGGTATCTGAT 154467 Query 109 CGTCTTCGA 117 |||||||| Sbjct 154466 TGTCTTCGA 154458 >seq226 Length=1716891 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| | || |||| ||||||||||| ||||| ||| |||||||||||||||||| Sbjct 1265750 ATAACGCCACCGGATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGAT 1265809 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 1265810 CGTCTTCGA 1265818 >seq262 Length=1609165 Score = 71.6 bits (78), Expect = 8e-11 Identities = 57/69 (83%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| ||| |||| ||||||||||| |||| ||| |||||||||||||||||| Sbjct 412335 ATAACGCAGCCGGATCGCTAGTCGGCATCATTTATGGTCGGAACTACGACGGTATCTGAT 412394 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 412395 CGTCTTCGA 412403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278334259320