Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2908 201 2e-49 seq1945 187 5e-45 seq226 185 2e-44 seq3412 178 2e-42 seq274 159 6e-37 seq2295 123 5e-26 seq1171 122 2e-25 seq475 114 2e-23 seq1213 100 5e-19 >seq2908 Length=93689 Score = 201 bits (222), Expect = 2e-49 Identities = 214/276 (78%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 86375 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 86317 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | || |||||| | ||| |||||||| ||||||||| | ||||| Sbjct 86316 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 86258 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | | |||||||| ||||| | |||||| | || Sbjct 86257 CTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 86198 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| ||||| ||| | |||||||| || Sbjct 86197 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATT 86138 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 86137 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 86103 Score = 98.7 bits (108), Expect = 2e-18 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||||||||||||| | || | | |||||||| ||||| | |||||| Sbjct 65907 CGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 65848 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| ||| | |||||| Sbjct 65847 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAA 65788 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||| ||||| Sbjct 65787 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGT 65748 >seq1945 Length=256476 Score = 187 bits (206), Expect = 5e-45 Identities = 211/276 (76%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 21191 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 21133 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | || |||||| | ||| |||||||| ||||||||| | ||||| Sbjct 21132 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 21074 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | | |||||||| ||||| | ||| || | || Sbjct 21073 CTATTTTGTTGGTTTTCGGAACTGTTGCCATGATTAAGAGGGACGGCCGGTGGCATTCGT 21014 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| |||| ||| | |||||||| || Sbjct 21013 ATTATGCCGCTAGAGGTGAAATTCTTGGACCGGCGTAAGATGAACCAAAGCGAAAGCATT 20954 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| ||||| |||||||||| |||||||||| Sbjct 20953 TGCCAAGAATGTTCTCATTAATCA-AGAACGAAAGT 20919 >seq226 Length=1716891 Score = 185 bits (204), Expect = 2e-44 Identities = 214/279 (77%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||| ||||||||| Sbjct 1266097 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAA-TTAGAGTGT 1266040 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | || |||||| | ||| |||||||| ||||||||| | ||||| Sbjct 1266039 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 1265981 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| || | | |||||||| ||||| | |||||| | || Sbjct 1265980 CTATTTTGTTGGTTTTCGTAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 1265921 Query 217 ATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||| || || ||||||||||||||||| ||||| ||| | |||||||| Sbjct 1265920 ATTG---TGCCACTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGC 1265864 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 1265863 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1265826 >seq3412 Length=52229 Score = 178 bits (196), Expect = 2e-42 Identities = 198/259 (76%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| |||| ||| |||||| ||| | | | ||||||||||||||||||||||||| Sbjct 49059 TGCTCTTGACTGAGTGCCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 49117 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| | || |||||| | ||| |||||||| ||||||||| | |||||| Sbjct 49118 CAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 49176 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 | |||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 49177 TTTTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 49236 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || || |||||||||||||||||| ||||| ||| | |||||||| || Sbjct 49237 TTGTGCTGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTT 49296 Query 278 ACCAAGGATGTTTTCATTA 296 ||||| |||||||||||| Sbjct 49297 GCCAAGAATGTTTTCATTA 49315 >seq274 Length=1577701 Score = 159 bits (176), Expect = 6e-37 Identities = 205/276 (74%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| | | |||| |||| |||||| ||| | | |||||||||||||||||||||||| Sbjct 1187935 ATGCTCATGACTGAGTGTCCCGGGG-GCCTTAAGCGTTTACTTTGAAAAAATTAGAGTGT 1187993 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | || |||||| | ||| |||||||| ||||||||| | ||||| Sbjct 1187994 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 1188052 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||| ||||||| | || | | |||||||| ||||| | |||||| | || Sbjct 1188053 CTATTTCCTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 1188112 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | || ||||||||||||||| ||||| ||| | ||||| || || Sbjct 1188113 ATTGTGCCGCTAGTGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAATGCATT 1188172 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| || |||||||| |||| ||| |||||| Sbjct 1188173 TGCCAAGAATTTTTTCATTTATCA-AGAATGAAAGT 1188207 >seq2295 Length=178014 Score = 123 bits (136), Expect = 5e-26 Identities = 149/199 (75%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| | || |||||||| ||||||||| | |||||||||||||||||||| | Sbjct 154257 GAATACTTCAGATGGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGA 154315 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTC---AGAGGT 233 || | | |||||||| ||||| | |||||| | ||||| || | |||||| Sbjct 154316 ACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTG---TGCCTCTAGAGGT 154372 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||||||| | ||||| ||| | | |||||| || ||||| ||||||||| Sbjct 154373 GAAATTCTTGGACCGGTGCAAGACGAACCAAAGTGAAAGCATTTGCCAAGAATGTTTTCA 154432 Query 294 TTAATCAGTGAACGAAAGT 312 ||||||| |||||||||| Sbjct 154433 TTAATCA-AGAACGAAAGT 154450 >seq1171 Length=550567 Score = 122 bits (134), Expect = 2e-25 Identities = 111/135 (82%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 240194 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 240136 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | | ||||| | ||| |||||||| ||||||||| | || || Sbjct 240135 TCAAAGCAGGCCAGTCACCTGAATATGTCAGCTAGGAATAATGGAATAGGAC-TCCGTTT 240077 Query 157 CTATTTTGTTGGTTT 171 ||||||||||||||| Sbjct 240076 CTATTTTGTTGGTTT 240062 >seq475 Length=1163320 Score = 114 bits (126), Expect = 2e-23 Identities = 203/296 (69%), Gaps = 35/296 (12%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAG 92 |||| |||| ||| |||| |||| || || |||| | | | |||||||||||||||||| Sbjct 154990 TCCG-ATGCTCTTGACTGAGTGTCCCAGG-AGCCCGAAGCGTTTACTTTGAAAAAATTAT 154933 Query 93 AGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC--- 148 ||||||||||||||||| | || |||||| | ||| |||||||| ||||||||| Sbjct 154932 AGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCT 154873 Query 149 ------------GTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 | ||||||||||||||||||| | || | | |||||||| || Sbjct 154872 ATTTTGGAATGGGATAGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAG 154813 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||| | || ||| | ||||| || ||||| |||||| |||| Sbjct 154812 GGACGGCCGAGGGCATTCGTATTGTGCTGCTAGAGGGGAAATTATTGG------------ 154765 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | || ||||| || | ||| ||||||||||| |||| |||||||||| Sbjct 154764 ---ACCAGCGCAAAAGCATTTGCTAAGAATGTTTTCATTTATCA-AGAACGAAAGT 154713 >seq1213 Length=529218 Score = 100 bits (110), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 7/182 (4%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| | ||||||||||||||||||| | || | | ||||| Sbjct 254319 GGAATAATGGAATAGGAC-TCTGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGAT 254261 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| | ||||| | ||| ||| ||| | Sbjct 254260 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGCGCAATACTTT--TTTGT 254203 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 || ||||| | | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 254202 TG--GACTACCAAA-GCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 254147 Query 311 GT 312 || Sbjct 254146 GT 254145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914969479424