Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq2908 86.0 4e-15 seq475 82.4 5e-14 seq273 77.0 2e-12 seq952 75.2 7e-12 seq504 75.2 7e-12 seq274 75.2 7e-12 seq1217 73.4 2e-11 seq262 73.4 2e-11 seq242 73.4 2e-11 >seq2908 Length=93689 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| |||||| ||||||||||||||||||| Sbjct 85409 CTCACTAAACCATC-CAATCGGTAGTA-GCGAAGGGCGGTGTGTACAAAGGGCAGGGACT 85466 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 85467 TAAT-CAACGCAAGCT 85481 >seq475 Length=1163320 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||| Sbjct 154021 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTCTGTACAAAGGGCAGGGACT 154078 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 154079 TAAT-CAACGCGAGCT 154093 >seq273 Length=1578729 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| | ||||||||||||||||| Sbjct 275976 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGCGTACAAAGGGCAGGGACT 275919 Query 109 TAATACAACGCAAGCT 124 |||| ||| || |||| Sbjct 275918 TAAT-CAATGCTAGCT 275904 >seq952 Length=684190 Score = 75.2 bits (82), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| |||| || ||||||||| ||||||||||| ||||||||||| ||||||| |||| Sbjct 485233 CTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGTCAGGGACTTAAT 485290 Query 113 ACAACGCAAGCT 124 |||||| |||| Sbjct 485291 -CAACGCGAGCT 485301 >seq504 Length=1111963 Score = 75.2 bits (82), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||| | |||| || |||||||| || |||||||| ||||||||||||||||||| Sbjct 383759 TCTCACTGAACCATC-CAATCGGTAGTG-GCAACGGGCGGTGTGTACAAAGGGCAGGGAC 383702 Query 108 GTAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 383701 TTAAT-CAACGCGAGCT 383686 >seq274 Length=1577701 Score = 75.2 bits (82), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 3/70 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | |||| |||||||||||| ||||||||| | ||||||||||||||||||| Sbjct 1188904 CTCACTGAACCATC-CATTCGGTAGTA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACT 1188847 Query 109 TAATACAACG 118 |||| ||||| Sbjct 1188846 TAAT-CAACG 1188838 >seq1217 Length=526419 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||| || || | ||||| ||||||||||||| Sbjct 324543 CTCACTAAGCCATC-CAATCGGTAGTA-GCGGCGAGCAGTGTGTAAAAAGGGCAGGGACC 324600 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 324601 TAAT-CAACCCAAGCT 324615 >seq262 Length=1609165 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | |||| || ||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 411764 CTCACTGAACCATC-CAATCGGTAGTA-GCGACGGTCGGTGTGTACAAAGGGCAGGGACT 411821 Query 109 TAATACAACGCAAG 122 |||| |||||| || Sbjct 411822 TAAT-CAACGCGAG 411834 >seq242 Length=1668502 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || ||||||| ||| |||| | ||||||||||||||||||| Sbjct 1262397 CTCACTAAACCATC-CAATCTGTAGTAA-CGATGGGCAGTGTGTACAAAGGGCAGGGAC- 1262341 Query 109 TAATACAACGCAAGCT 124 ||| ||||||||||| Sbjct 1262340 TAAATCAACGCAAGCT 1262325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300728969840