Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq226 102 1e-19 seq2908 100 3e-19 seq1945 98.7 1e-18 seq3412 91.5 2e-16 seq1171 91.5 2e-16 seq274 86.0 7e-15 seq475 75.2 1e-11 >seq226 Length=1716891 Score = 102 bits (112), Expect = 1e-19 Identities = 144/192 (75%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 1265966 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCG 1266024 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 1266025 ACCGGCCTGCTTTGAACACTCTAATTTT-TCAAAGTAAACGCTTCGGGCCCCCGGGACAC 1266083 Query 129 -CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 1266084 TCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 1266143 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 1266144 TCGTGGCGGACC 1266155 >seq2908 Length=93689 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 86243 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCG 86301 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 86302 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGGACAC 86361 Query 129 -CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 86362 TCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 86421 Query 184 GTGAGGCGGACC 195 | ||| |||| Sbjct 86422 TCGCGGCAGACC 86433 >seq1945 Length=256476 Score = 98.7 bits (108), Expect = 1e-18 Identities = 142/191 (74%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 21059 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCG 21117 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 21118 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGGACAC 21177 Query 129 -CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 21178 TCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 21237 Query 184 GTGAGGCGGAC 194 ||||||| Sbjct 21238 CCACGGCGGAC 21248 >seq3412 Length=52229 Score = 91.5 bits (100), Expect = 2e-16 Identities = 141/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||||||| || || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 49190 AAACCAACAAAAAAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCG 49132 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | ||| Sbjct 49131 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGGGCAC 49072 Query 129 -CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| ||| ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 49071 TCAGTCAAGAGCACCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 49012 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 49011 TCGCGGCGGACC 49000 >seq1171 Length=550567 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| | ||||||||| |||||||| ||| | ||||| || | Sbjct 240062 AAACCAACAAAATAGAAACGGA-GTCCTATTCCATTATTCCTAGCTGACATATTCAGGTG 240120 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 240121 ACTGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 240159 >seq274 Length=1577701 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| |||||| || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 1188067 AAACCAAGGAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCG 1188009 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 1188008 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1187970 >seq475 Length=1163320 Score = 75.2 bits (82), Expect = 1e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAG-CCTGCTTTGAACACTCTA 91 ||||||||| |||||||| ||| | |||||| |||| | ||||||||||||||| || Sbjct 154876 GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCGACCGGCCTGCTTTGAACACTATA 154935 Query 92 ATTTTCTCAAGGTAAA 107 ||||| |||| ||||| Sbjct 154936 ATTTTTTCAAAGTAAA 154951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595054765992