Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3412 114 1e-23 seq2908 114 1e-23 seq1945 109 6e-22 seq274 100 3e-19 seq226 98.7 1e-18 seq1171 91.5 2e-16 seq475 75.2 1e-11 >seq3412 Length=52229 Score = 114 bits (126), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | || Sbjct 49093 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 49152 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | ||||||| |||||| ||||| | ||| | | ||||| Sbjct 49153 AATAATGGAATAGGAC-TCCGGTTCTTTTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 49210 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| || | |||||||||||||||| Sbjct 49211 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCTGCTAGAGGTGAAATTCTTGGA 49264 >seq2908 Length=93689 Score = 114 bits (126), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | || Sbjct 86340 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 86281 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 86280 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 86223 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 86222 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 86169 >seq1945 Length=256476 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | || Sbjct 21156 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 21097 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 21096 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTTGCCATGATT 21039 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | ||| || | ||||| | | |||||||||||||||| Sbjct 21038 AAGAGGGACGGCCGGTGGCATTCGTATTATGCCGCTAGAGGTGAAATTCTTGGA 20985 >seq274 Length=1577701 Score = 100 bits (110), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | || Sbjct 1187970 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 1188029 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | ||||||||||| | ||||| | ||| | | ||||| Sbjct 1188030 AATAATGGAATAGGAC-TCCGGTTCTATTTCCTTGGTTT-TCGGAACTGGGGCCATGATT 1188087 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | ||||||||||||||| Sbjct 1188088 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGTGGTGAAATTCTTGGA 1188141 >seq226 Length=1716891 Score = 98.7 bits (108), Expect = 1e-18 Identities = 132/177 (75%), Gaps = 10/177 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||||||| |||||| |||||||||||||| | || |||||| | | | || Sbjct 1266062 TTTACTTTGAAAAA-TTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 1266004 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | | | | | ||||| Sbjct 1266003 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGTAACTGGGGCCATGATT 1265946 Query 132 AATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | | | |||||||||||||||| Sbjct 1265945 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 1265892 >seq1171 Length=550567 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | | ||||| | | | || Sbjct 240159 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCAGTCACCTGAATATGTCAGCTAGG 240100 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | || ||||||||||| ||||| Sbjct 240099 AATAATGGAATAGGAC-TCCGTTTCTATTTTGTTGGTTT 240062 >seq475 Length=1163320 Score = 75.2 bits (82), Expect = 1e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||||||||||| || |||||||||||||| | || |||||| | | | || Sbjct 154951 TTTACTTTGAAAAAATTATAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 154892 Query 72 AATAATAGAATAGGAC 87 |||||| ||||||||| Sbjct 154891 AATAATGGAATAGGAC 154876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511875067520