Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1213 104 4e-20 seq704 104 4e-20 seq279 104 4e-20 seq2295 100 5e-19 seq2098 98.7 2e-18 seq1288 91.5 2e-16 seq1580 89.7 8e-16 seq932 89.7 8e-16 seq60 89.7 8e-16 seq1823 86.0 1e-14 seq1 86.0 1e-14 seq112 82.4 1e-13 seq274 78.8 2e-12 seq44 78.8 2e-12 seq31 78.8 2e-12 seq554 77.0 5e-12 seq1167 73.4 6e-11 >seq1213 Length=529218 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 243591 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 243534 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 243533 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 243480 >seq704 Length=882864 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 100804 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 100747 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 100746 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 100693 >seq279 Length=1561422 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 117377 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 117434 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 117435 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 117488 >seq2295 Length=178014 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 156010 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAAT 156067 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 156068 GGGGCGAAGCTACCATCTGTGGGATTATGACAGAACGCCTCTAAGTCAGAATCC 156121 >seq2098 Length=211726 Score = 98.7 bits (108), Expect = 2e-18 Identities = 93/115 (81%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACC-GCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 |||||||||||||| | || |||||| | ||||| | || | || |||| || || Sbjct 28960 GTACGAGAGGAACCAGAGG--TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAA 29016 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 29017 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 29071 >seq1288 Length=495934 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 76567 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 76624 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 76625 GGGGAGAAGCTACCATCGGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 76678 >seq1580 Length=362014 Score = 89.7 bits (98), Expect = 8e-16 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 9 GGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAA 68 |||||||| | |||||| | ||||| | || | || |||| || || || ||||| Sbjct 30611 GGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAA 30668 Query 69 GCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 30669 GCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 30714 >seq932 Length=695877 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| | | || | || |||| || || | Sbjct 88689 GTACGAGAGGAACCGCA-AGTTCAGACTT-TTGCTGTATGTGCTTGGCTGAGGAGCCAAT 88746 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TAAGTCAGAATCC 114 | || ||||| |||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 88747 GGGGCAAAGCTTCCATCTGCGGGATTATGACTGAACGCCTCTTAAGTCAGAATCC 88801 >seq60 Length=2870083 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||| |||||||| | | |||||| | ||||| | || | || |||| || ||||| Sbjct 1771554 TACCAGAGGAACTTCAGG-TTCAGACT--TTGGTGTATGTGCTTGGCTGAGGAGCCAGTG 1771498 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1771497 GGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1771445 >seq1823 Length=287687 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||| || | ||||| | || | || |||| || || | Sbjct 252423 GTACGAGAGGAACCGCAGG-TTCAAAA-ATTTGGTGTATGTGTTTGGCTGAGGAGCCAAT 252366 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||||| ||||||||| |||||| Sbjct 252365 GGGACAAAGCTACCATCTGTGGGATTATGACTGAACGTCTCTAAGTCTGAATCC 252312 >seq1 Length=8606022 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | |||| | ||||| | || | || |||| || || | Sbjct 5787605 GTACGAGAGGAACCGCAGGCT-CAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAAT 5787548 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||| ||||| || ||||||||||||||| Sbjct 5787547 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAATGCTTCTAAGTCAGAATCC 5787494 >seq112 Length=2339252 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 1189881 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1189940 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 1189941 GTCAGAATCC 1189950 >seq274 Length=1577701 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 8 AGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGA 67 ||||||||| | |||||| | ||||| | || | || |||| || || || |||| Sbjct 1189034 AGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGA 1189091 Query 68 AGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||| |||| |||||||| ||||| ||||| |||||||||||| Sbjct 1189092 AGCTACCCTCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 1189138 >seq44 Length=3061177 Score = 78.8 bits (86), Expect = 2e-12 Identities = 74/93 (80%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 1489909 TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 1489967 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 |||||||| |||||||||||||| |||||||| Sbjct 1489968 GGGATTATGACTGAACGCCTCTAACTCAGAATC 1490000 >seq31 Length=3386511 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||| | || | || |||| || || || |||||||||||||||| |||||||| | Sbjct 2019993 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 2020052 Query 92 TGAACGCCTCTAAGTCAGAATCC 114 ||||||||||| ||||||||||| Sbjct 2020053 TGAACGCCTCTGAGTCAGAATCC 2020075 >seq554 Length=1052405 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 390988 GTAGGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 391045 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| || || |||||||||||| ||||| Sbjct 391046 GGGGTGAAGCTACCATCTGTGGGATTATGACTTAAGGCCTCTAAGTCAAAATCC 391099 >seq1167 Length=551393 Score = 73.4 bits (80), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||||| | | || || | || | || |||| || || | Sbjct 466352 GTACGAGAGGAACCGCAG-GTTCAG-ACATTTTGTGTATGTGCTTGGCTGAGGAGCCAAT 466295 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || | |||| |||||| |||||||| |||||| ||||||||| ||||||| Sbjct 466294 GGGGCAAGGCTA-CATCTGTGGGATTATGACTGAACACCTCTAAGTTAGAATCC 466242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819000108032