Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5 149 9e-34 seq1 111 2e-22 >seq5 Length=144167370 Score = 149 bits (164), Expect = 9e-34 Identities = 166/218 (76%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||||| | ||||||||||||| ||||| || |||||| |||||| | Sbjct 4438112 GTACAAAGTGCAGGGACTTTATCAACGCGAGCTT-ATGACCAGCACTTACTGGGAATT-C 4438169 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| | ||| | ||||||| |||| | || Sbjct 4438170 CTCATTCATGGGAAATAATTGCAATCCCCGATCGCTATCACGAACGGGGTTCAGCGGGTT 4438229 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||| ||| | Sbjct 4438230 ACCCGCACCTGTCGGCGCAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCACGTCCA 4438289 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 4438290 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4438327 Score = 141 bits (156), Expect = 1e-31 Identities = 182/239 (76%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| | Sbjct 21765111 GTACAAAGGGCAGGGACTTAATCAACTCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 21765168 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAAGA 117 |||||| | || ||||||||| | |||| |||| ||||| |||| | Sbjct 21765169 CTCGTTCATAGGAAATAATTGCAATCCCCGATCCTTATCA---TGAAAGGGGTTCAGCGG 21765225 Query 118 -TTACCCGGACCTGTCGGC-CAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGC 174 ||||||| |||||||| | || |||| | || || ||| | ||| |||||||| ||| Sbjct 21765226 GTTACCCGCACCTGTCGACGCAGGGTGG-ACACCCGCTGA-TCCATTCAGTGTAGTGCGG 21765283 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||| ||||||||||||||||||||| |||||||| ||| | ||| ||||| Sbjct 21765284 GTGCAGCCCCAGACATCTAAGGGCATCACAGACTTGTTATTG-CTCGATCTTGTGTGGC 21765341 >seq1 Length=219802468 Score = 111 bits (122), Expect = 2e-22 Identities = 121/157 (77%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGC 135 |||||||||| | ||||| ||||||| |||| | ||||||| |||||| ||| Sbjct 68034792 AATTGCAATGCCCGATCCCTATCACGAACGGGGTTCAGCGGGTTACCCGCACCTGTTGGC 68034733 Query 136 CAAGGTGATAGACTCGTTGA------ATACAT-CAGTGTAGCGCGCGTGCGGCCCAGAAC 188 |||| | | || || ||| |||||| ||||||| ||||||||| |||| | || Sbjct 68034732 AAAGGGTAGACACACGCTGATCACTGATACATGCAGTGTATCGCGCGTGCAGCCCCGGAC 68034673 Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||| ||||| || Sbjct 68034672 ATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 68034637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751212979595