Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5 190 4e-46 seq290 150 3e-34 seq1 149 1e-33 seq9 113 8e-23 seq12 98.7 2e-18 seq39 86.0 1e-14 seq8 78.8 2e-12 seq4 77.0 6e-12 >seq5 Length=144167370 Score = 190 bits (210), Expect = 4e-46 Identities = 212/277 (77%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| ||||||||||| ||| | | | |||||||||||||||||||||||| Sbjct 4439032 ATGCTCTTGACTGAGTGTGCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 4438974 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || ||||||||| | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 4438973 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 4438915 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| || |||||| | | Sbjct 4438914 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACAGCCGGGGGCATTCG 4438855 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | |||||||||||||||||| ||||| ||| | ||||||| | Sbjct 4438854 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAACCGAAAGCAT 4438795 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| ||| |||||| Sbjct 4438794 TTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 4438759 Score = 174 bits (192), Expect = 3e-41 Identities = 211/280 (75%), Gaps = 13/280 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| || | | | ||||||||||||||||| |||||| Sbjct 4474068 ATGCTCTTGACTGAGTGTCCCGGGG--CCCGAAGTGTTTACTTTGAAAAAATTTGAGTGT 4474011 Query 98 TCAAAGCAGGC--CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || |||||||| | | | | |||| | ||| |||||||| ||||||||| | || Sbjct 4474010 TCCAAGCAGGCTGCATCACCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCAAGT 4473952 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| || |||||| || | Sbjct 4473951 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACAGCCGGGGGCGTTCG 4473892 Query 216 TATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 |||| || || ||||||||||||||||| | || || ||| | ||||||| Sbjct 4473891 TATTG---TGCCACTAGAGGTGAAATTCTTGGACTGGCGCAAAACGAACCAAAGCGAAAG 4473835 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| |||||||||||||||| |||||||||| Sbjct 4473834 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 4473796 >seq290 Length=26288 Score = 150 bits (166), Expect = 3e-34 Identities = 204/278 (73%), Gaps = 15/278 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| || ||| ||| | | | |||||||||||||||||||||||| Sbjct 15828 ATGCTCTTGACTGAGTGTCCCTGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 15770 Query 98 TCAAAGCAGGC--CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || |||||||| ||| || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 15769 TCCAAGCAGGCCACTTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 15711 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 | |||||||||||||| | | || | | |||||| | |||||| | |||||| | | Sbjct 15710 TGTATTTTGTTGGTTTTTGGAACTGGGGCCATGATTGAGAGGGATGGCCGGGGGCATTCG 15651 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | ||| |||||| ||||||| | | || | ||||||| | Sbjct 15650 TATTGTGCCGCTAGAAGTGAAAGTCTTGGA-----CCAGCGCCAAAT----CGAAAGCAT 15600 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||||| |||||||||||||||| ||| ||| ||| Sbjct 15599 TTGCCAAGAATGTTTTCATTAATCA-AGAATGAATGTT 15563 >seq1 Length=219802468 Score = 149 bits (164), Expect = 1e-33 Identities = 191/260 (73%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 41 GCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTC 99 || ||| |||| ||| ||||| || | | | |||||||||||||||||||||||||| Sbjct 68037440 GCTCTTGACTGAATGTCACGGGGGCCCTGAAGCATTTACTTTGAAAAAATTAGAGTGTTC 68037499 Query 100 AAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||| | || | |||| | ||| | |||||| ||||||||| || ||||| Sbjct 68037500 CAAGCAGGCCACGTCGCCTGGATACTTCAGCTAGAAATAATGGAATAGGAC-TGTGGTTC 68037558 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | |||||| | |||||| | |||||| | ||| Sbjct 68037559 TATTTTGTTGGTTTTCGGAACTGGGACCATGATTGAGAGGGATGGCCGGGGGCATTCGTA 68037618 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| | ||||| ||| | || |||| || Sbjct 68037619 TTGTGCCGCAAGAGGTGAAATTCTTGGACCGACACAAGACGAACCAAAGCAAAAGTATTT 68037678 Query 278 ACCAAGGATGTTTTCATTAA 297 ||||| ||||||||||||| Sbjct 68037679 GCCAAGAATGTTTTCATTAA 68037698 >seq9 Length=159361991 Score = 113 bits (124), Expect = 8e-23 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 89 TTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGG 146 |||||| ||| ||||||||| | || | |||| | ||| |||||||| ||||||| Sbjct 4392154 TTAGAGAGTTTGAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGG 4392213 Query 147 ACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206 || | | ||||||||||| |||||| | || | | || ||||| ||||| | ||| Sbjct 4392214 AC-TCCAGTTCTATTTTGATGGTTTTCGGAACTGGGGCCATAATTAAGAGGGACGGCCGG 4392272 Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 ||| | ||||| || ||||||||||||||||| | ||||| ||| | | Sbjct 4392273 GGGCATTCGTATTTTGCTGCTAGAGGTGAAATTCTTGGTCTGGCACAAGACGAACCAGAG 4392332 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||||| || || || |||||||||||||||| ||| ||||| Sbjct 4392333 CGAAAGTATTTGCCGAGAATGTTTTCATTAATCA-AGAATGAAAG 4392376 >seq12 Length=128359586 Score = 98.7 bits (108), Expect = 2e-18 Identities = 132/178 (74%), Gaps = 12/178 (7%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCAT 130 ||||||||||||||||| |||||||| ||||| ||| |||| | |||| | ||| Sbjct 43226526 TTTACTTTGAAAAAATTTGAGTGTTCCAAGCA-TCCTGTGTTGCCTGTATACTTCAGCTA 43226468 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||| |||| ||||||||| | |||||||||||||||||| | | || | | || || Sbjct 43226467 GGAGTAATGGAATAGGAC-ACCAGTTCTATTTTGTTGGTTTTTGGAACTGGGGCCATTAT 43226409 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAGAGGTGAAATTCTTGGA 245 ||| |||| | || | || |||||||| | | | ||||||||| |||||||| Sbjct 43226408 TAAGAGGGGCATTC-GTGGCATCAGTATTGCGCCACT---AGAGGTGAAGTTCTTGGA 43226355 >seq39 Length=1807405 Score = 86.0 bits (94), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 10/160 (6%) Strand=Plus/Minus Query 92 GAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACG 149 || ||| | ||||||||| | | | | |||| | ||| |||||||| ||||||||| Sbjct 131948 GATTGTCCCAAGCAGGCCGTGTCACCTGGATACTTCAGCTAGGAATAATGGAATAGGACT 131889 Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACC----GCCGTAATGATTAATAGGGATAGTCG 205 | |||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct 131888 T-CGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCC--ATGATTAAGAGGGACCGCCG 131833 Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||| | ||||| | |||||||||||||||||| Sbjct 131832 GGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 131793 >seq8 Length=121245977 Score = 78.8 bits (86), Expect = 2e-12 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAA-AGCAGGCCTTTGC-TC-GAATACATTAGCA 129 ||||||||||||||| |||||||||| | ||||||| | | || | |||| | || Sbjct 23649596 TTTACTTTGAAAAAAATTAGAGTGTTTTACAGCAGGCTGTGTCATCTGGATACTTCAGAT 23649655 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||| |||||| || | ||||||||||| ||||||| | | || | | ||||| Sbjct 23649656 AGGAATAATGGAATAGAAC-TACGGTTCTATTTCTTTGGTTTTTGGAACTGGGGCAATGA 23649714 Query 190 TTAATAGG 197 |||| ||| Sbjct 23649715 TTAAGAGG 23649722 >seq4 Length=159726490 Score = 77.0 bits (84), Expect = 6e-12 Identities = 77/101 (76%), Gaps = 12/101 (12%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 || ||||||||||| ||||||||||||| ||||||| |||| | ||| Sbjct 88332778 ACATTTACTTTGAAGAAATTAGAGTGTTTGAAGCAGG-----------ATACTTCAGCTA 88332826 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||| ||||||||| | ||||||||| ||||||||| Sbjct 88332827 GGAATAATGGAATAGGAC-TTTGGTTCTATTCTGTTGGTTT 88332866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914211281984