Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5 214 3e-53 seq1 179 6e-43 seq9 168 1e-39 seq2 167 4e-39 seq13 154 2e-35 seq48 105 1e-20 seq7 105 1e-20 seq3 104 4e-20 seq8 100 5e-19 seq4 89.7 8e-16 >seq5 Length=144167370 Score = 214 bits (236), Expect = 3e-53 Identities = 199/247 (81%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||| ||| | |||| | ||||||||||||||||||||||||||||| Sbjct 4438266 TCCGTTCAGTGTAGCGCACGTCCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 4438325 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || || | || | ||||| | |||| | ||||||||| |||| | | || Sbjct 4438326 GC-TCGATTTTGTGT-GGCTGAACGCCACTTGTCCCTCTACGAAGTTGGACCCCGGGG-- 4438381 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 |||| | ||| |||||| | ||||||||||||||||||||||| ||||||| Sbjct 4438382 -GTCGC-GTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAAAGAGACAAA 4438439 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 4438440 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 4438499 Query 251 AATCTGT 257 ||||||| Sbjct 4438500 AATCTGT 4438506 Score = 93.3 bits (102), Expect = 7e-17 Identities = 82/100 (82%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| ||| |||| |||| ||||||||||||||||||||| |||||||| ||| Sbjct 21765270 TCAGTGTAGTGCGGGTGCAGCCCCAGACATCTAAGGGCATCACAGACTTGTTATTG-CTC 21765328 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | ||| |||||| | |||| | |||||||||||||| Sbjct 21765329 GATCTT-GTGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 21765367 >seq1 Length=219802468 Score = 179 bits (198), Expect = 6e-43 Identities = 188/244 (77%), Gaps = 25/244 (10%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 68034699 CAGTGTATCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 68034641 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || ||| ||| | || ||||||||||||||| | || | Sbjct 68034640 ATCTCGTGTTG--------CCACTTGTTCCTCTAAGAAGCCAGGGGTCG--CAAAA---- 68034595 Query 137 TGGGGCTATTTAGCAGGTTAAGG--TCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 ||| |||||| | |||| | ||||| ||||| ||||| |||||| |||||| | Sbjct 68034594 -----CTAGTTAGCATG--AAGGAGTTTCGTTTGTTATTGGAATGAACCAG-CAAATCGC 68034543 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| Sbjct 68034542 TCCACCAACTAAGAGCTCCCATGCACCACCACCCATAGAATGGAGAAAGAGCTATCAATC 68034483 Query 255 TGTC 258 |||| Sbjct 68034482 TGTC 68034479 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| |||||||||||||||||||| ||||| ||||||| | |||||||||||| Sbjct 127033631 CTGAGATCGGCCATGCACCACCACCCAAAGAATTAAGAAAGGGTTATCAATCTGTC 127033576 >seq9 Length=159361991 Score = 168 bits (186), Expect = 1e-39 Identities = 190/247 (77%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCC-AGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||| ||| |||| |||| ||||||||| ||||||||||||||||||| | Sbjct 71043873 TCAGTGTAGTGCGCATGCAGCCCCAGAA-ATCTAAGGGAATCACAGACCTGTTATTGC-T 71043816 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC---CAACCATA 131 | || | ||| || | |||| | | | |||||||||| ||| | || Sbjct 71043815 CGTTCT-CGTGTGGGTGAATGCCACTTGCCTCTCTAAGAAGTTGTACACAGGCTGCCGGG 71043757 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA- 190 | ||| ||| |||||| | |||||||| |||||| |||||||||||||||| Sbjct 71043756 GGTCATGTAACTAATTAGCATGGAGGAGTCTCGTTTGTTATCTGAATTAACCAGACAAAA 71043697 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||| Sbjct 71043696 TCGATCCACCAACTAAGAACAGCCATGTACCACAACCCACAGAATCGAGAAAGAGCTATC 71043637 Query 251 AATCTGT 257 ||||||| Sbjct 71043636 AATCTGT 71043630 >seq2 Length=179946965 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 18339296 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 18339237 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 18339236 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 18339197 Score = 105 bits (116), Expect = 1e-20 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| || Sbjct 11765215 GTCTCGTTCATTATCGGAATTAACCAGACAAACCGCTCCACCAACTAAGAACGGCCACGC 11765156 Query 219 ACCACCACCCA 229 ||||||| ||| Sbjct 11765155 ACCACCAACCA 11765145 >seq13 Length=126821045 Score = 154 bits (170), Expect = 2e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 102772289 GTCTGGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACAAACTAAGAACGGCCATGC 102772230 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||| |||||| ||||||||||||||||||||| Sbjct 102772229 ACCACCTCCCACAGAATCGAGAAAGAGCTATCAATCTGTC 102772190 >seq48 Length=1351583 Score = 105 bits (116), Expect = 1e-20 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| |||||| || |||||||||||||| |||||||||||||||| | ||| || Sbjct 347891 GTCTAGTTTGTTATCTGACTTAACCAGACAAATTGCTCCACCAACTAAGAATGCCCAGGC 347950 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | || || ||| |||| ||||||||||||||||||||| Sbjct 347951 ATCA-CAGCCACTGAATTGAGAAAGAGCTATCAATCTGTC 347989 Score = 100 bits (110), Expect = 5e-19 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| |||||| || |||||||||||||| |||||||||||||||| | ||| || Sbjct 1212473 GTCTAGTTTGTTATCTGACTTAACCAGACAAATTGCTCCACCAACTAAGAATGCCCAGGC 1212414 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | || || ||| || | ||||||||||||||||||||| Sbjct 1212413 ATCA-CAGCCACTGATTTGAGAAAGAGCTATCAATCTGTC 1212375 >seq7 Length=144084680 Score = 105 bits (116), Expect = 1e-20 Identities = 78/91 (86%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||||| |||||||||||||| ||| ||||| |||||||||| |||||| |||||||||| Sbjct 98754333 GTTATCAGAATTAACCAGACATATCGCTCCATCAACTAAGAATGGCCATACACCACCACC 98754392 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| | |||||||||||||| || Sbjct 98754393 CACAGAAT----AGAGAGCTATCAATCTATC 98754419 >seq3 Length=181146889 Score = 104 bits (114), Expect = 4e-20 Identities = 86/105 (82%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||| | |||||| |||||||| |||||||||||||||| |||||||| Sbjct 83696811 GTCTCACACGTTATTGAAATTAAGCAGACAAACTGCTCCACCAACTAAGAATGGCCATGC 83696870 Query 219 ACCACCACCCATAGAATCAAGAAA-----GAGCTATCAATCTGTC 258 ||||||||||| |||| ||||| |||||||||||||||| Sbjct 83696871 ACCACCACCCACAGAACTGAGAAAGAGCTGAGCTATCAATCTGTC 83696915 >seq8 Length=121245977 Score = 100 bits (110), Expect = 5e-19 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGG--TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||| |||||| | |||| ||| ||| ||| |||||||||||||||||||||||||||| Sbjct 43699180 CTAATTAGCATG--AAGGATTCTTGTTTGTTGTCGGAATTAACCAGACAAATCACTCCAC 43699237 Query 200 CAACTAAGAACGGCCATGCACCACCA 225 || ||||||| ||||||||||||||| Sbjct 43699238 CATCTAAGAATGGCCATGCACCACCA 43699263 >seq4 Length=159726490 Score = 89.7 bits (98), Expect = 8e-16 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 ||||||||| | ||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 88333291 TCGGAATTATCTAGACAAATCTCTCCACCAACTAAGAACAGCCATGCACCACCATCCATA 88333232 Query 232 GAAT 235 ||| Sbjct 88333231 AAAT 88333228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795966093273