Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2 286 6e-75 seq12 280 3e-73 seq17 152 9e-35 seq16 136 7e-30 seq4 96.9 6e-18 seq37 77.0 6e-12 >seq2 Length=179946965 Score = 286 bits (316), Expect = 6e-75 Identities = 202/230 (88%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 6 AGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGAC 64 ||| | ||||| |||| | | || |||||||||||||||||||||||||| ||| ||| Sbjct 140333968 AGCAGGATTACTATTGCGACAACACATCATCAGTAGGGTAAAACTAACCTGTTTCACGAC 140333909 Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 140333908 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTC 140333849 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| |||||||||||||||||||||||||||||||| | |||| ||||||| Sbjct 140333848 TGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAATACTGACGTTACTATGAAT 140333789 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 140333788 GATTGGCCGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTGACACCTC 140333739 >seq12 Length=128359586 Score = 280 bits (310), Expect = 3e-73 Identities = 204/235 (87%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | | || ||||||||||||||||||||||||||||| Sbjct 127103858 TACTGAGCAGGATTACTATTGTGACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 127103917 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||| | |||||||||||||||||||||||||||||||||||| | Sbjct 127103918 ACGACGGTCTAAACCCAACACACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 127103977 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||| ||| | || |||| Sbjct 127103978 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAATAGCGATGTTGCTA 127104037 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| ||||||||| | |||||| ||||||| |||||| Sbjct 127104038 TGAACGCTTGGCCATCACAAGTCAGTTATCCGTATGGTAAATTTTCTGACACCTC 127104092 >seq17 Length=117834370 Score = 152 bits (168), Expect = 9e-35 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| ||| || |||||| ||||||| |||||||||||||||||||| |||||||| Sbjct 83720379 GAATTATGCATCACAATGATATTAAGAGCCAACATCGAAGGATCAAAAAGCGACGTCGCT 83720320 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||| ||||||||||||||||| |||| |||| | |||||| || Sbjct 83720319 ATGAACGCTTGGCCGCCACGAGCCAGTTATCCCTGTGTTAACATTTCGGACACCTCCTGC 83720260 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | | |||||||| ||| | | |||||| ||| | |||| Sbjct 83720259 TTAAAACTGAAAAAGTCAGAAGGATCGTGAGGTCCCGCTTTCACGGTCTTTATT 83720206 >seq16 Length=98932710 Score = 136 bits (150), Expect = 7e-30 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||| ||| || |||||||||||| |||| |||||||| Sbjct 66828538 TCATCAGTAGGGTAAAACTAACCTGTTTCACGAGGGTCTAAACCCAACTCATGTTCCCTA 66828597 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| ||||||||||||||||||||| ||| |||||||| Sbjct 66828598 TTATTGGGTGAACAATCCAACGCTTGGTGAACTCTGCTTC 66828637 >seq4 Length=159726490 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| | Sbjct 23220472 GGGTGGACAATCCAACGCTTGGTCAATGCTGCTTCACAATGATAGGAAGAGCCGACATTG 23220413 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAA 183 ||||||||||||| || |||||| ||| Sbjct 23220412 AAGGATCAAAAAGTGACATCGCTAAGAA 23220385 >seq37 Length=2100935 Score = 77.0 bits (84), Expect = 6e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||| || | |||||||| || ||||||||||||||| | | |||||||| ||||||||| Sbjct 1327434 ATGCTATGGAGAGCCGATATAAAAGGATCAAAAAGCAGCTTTGCTATGAATGCTTGGCTG 1327375 Query 194 CCACAAGCCAGTTATCCCTGTG 215 | | || ||||| ||| || || Sbjct 1327374 CTATAAACCAGTAATCTCTTTG 1327353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853476966048