Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-17 seq290 84.2 3e-14 seq1 80.6 3e-13 >seq5 Length=144167370 Score = 95.1 bits (104), Expect = 1e-17 Identities = 142/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 4438899 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 4438957 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 |||||||| ||||||||||||||| |||| ||||| | || || | ||||| Sbjct 4438958 ACGCGGCCTGCTTGGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGCACA 4439017 Query 128 C-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || ||||| | |||||||| | || ||| ||| | Sbjct 4439018 CTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCAC 4439077 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 4439078 CTCGCGGCGGACC 4439090 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||||||||| | || ||||||||| |||||||| ||| | |||| | || | Sbjct 4473936 AAACCAACAAAATA-GAACTTGAGTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGTG 4473994 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||||||| |||||||| |||||| |||| ||||| Sbjct 4473995 ATGCAGCCTGCTTGGAACACTCAAATTTTTTCAAAGTAAA 4474034 >seq290 Length=26288 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 15695 AAACCAACAAAATACAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 15753 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||| ||||||||||||||| |||| ||||| Sbjct 15754 AAGTGGCCTGCTTGGAACACTCTAATTTTTTCAAAGTAAA 15793 >seq1 Length=219802468 Score = 80.6 bits (88), Expect = 3e-13 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | || ||||||||| |||||| | ||| | |||| | |||| Sbjct 68037572 AAACCAACAAAATAGAACCACA-GTCCTATTCCATTATTTCTAGCTGAAGTATCCAGGCG 68037514 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||| ||||||||||||||| |||| ||||| Sbjct 68037513 ACGTGGCCTGCTTGGAACACTCTAATTTTTTCAAAGTAAA 68037474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594577081722