Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-21 seq1 96.9 4e-18 seq290 95.1 1e-17 >seq5 Length=144167370 Score = 107 bits (118), Expect = 2e-21 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| | | || | |||| | | | | Sbjct 4438997 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAG 4438938 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 4438937 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 4438880 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || |||||| | ||||| | | |||||||||||||||| Sbjct 4438879 TAAGAGGGACAGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 4438825 Score = 91.5 bits (100), Expect = 2e-16 Identities = 130/178 (73%), Gaps = 10/178 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||| ||| |||| |||||||| | | | | |||| | | | | Sbjct 4474034 TTTACTTTGAAAAAATTTGAGTGTTCCAAGCAGGCTGCATCACCTGGATACTTCAGCTAG 4473975 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||| ||||| | ||| | | ||||| Sbjct 4473974 GAATAATGGAATAGGAC-TCAAGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 4473917 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || |||||| || ||||| | | | | |||||||||||||||| Sbjct 4473916 TAAGAGGGACAGCCGGGGGCGTTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 4473862 >seq1 Length=219802468 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/178 (74%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| | | || | |||| | | | | Sbjct 68037474 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCACGTCGCCTGGATACTTCAGCTAG 68037533 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC---GCCCGTAAT 127 |||||| ||||||||| || ||||||||||||| ||||| | ||| | | || || Sbjct 68037534 AAATAATGGAATAGGAC-TGTGGTTCTATTTTGTTGGTTT-TCGGAACTGGGACC---AT 68037588 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| | | |||| | |||||| | ||||| | | |||||||||||||||| Sbjct 68037589 GATTGAGAGGGATGGCCGGGGGCATTCGTATTGTGCCGCAAGAGGTGAAATTCTTGGA 68037646 >seq290 Length=26288 Score = 95.1 bits (104), Expect = 1e-17 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| ||| || | |||| | | | | Sbjct 15793 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCACTTCGCCTGGATACTTCAGCTAG 15734 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | ||||| |||||||| ||||| | ||| | | ||||| Sbjct 15733 GAATAATGGAATAGGAC-TCCGGTTGTATTTTGTTGGTTT-TTGGAACTGGGGCCATGAT 15676 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | |||| | |||||| | ||||| | | | |||||| ||||||| Sbjct 15675 TGAGAGGGATGGCCGGGGGCATTCGTATTGTGCCGCTAGAAGTGAAAGTCTTGGA 15621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511464156320