Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-34 seq1 95.1 2e-17 >seq5 Length=144167370 Score = 150 bits (166), Expect = 3e-34 Identities = 194/260 (75%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| | ||| |||||||| ||||||| Sbjct 21765367 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACACAAGATCGAG-CAATAACAAGTCTGTG 21765310 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATC 189 |||||||||||||| |||| |||| ||| ||||||||| | || || || || | Sbjct 21765309 ATGCCCTTAGATGTCTGGGGCTGCACCCGCACTACACTGAATGGATCAGCGGGTGTC--C 21765252 Query 190 ACCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||| || | || |||| |||||| | | || | || || || | |||| | | || Sbjct 21765251 ACCCTGCGTCGACAGGTGCGGGTAACCCGCTGAACCCCTTTCATGATAAGGATCGGGGAT 21765192 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | |||||||||| || |||||| ||| ||||| ||| | ||||| Sbjct 21765191 TGCAATTATTTCCTATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGAGTTGA 21765132 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 21765131 TTAAGTCCCTGCCCTTTGTA 21765112 Score = 149 bits (164), Expect = 1e-33 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| | ||| |||||||||||| | Sbjct 4438327 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGGACGTGCGCTACACTGAACG 4438268 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | ||| |||| |||| |||||| | | || | | ||||| Sbjct 4438267 GATCAGCGTGTGTCTACCCTGCGCCGACAGGTGCGGGTAACCCGCTGAACCCCGTTCGTG 4438208 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | | ||| | | |||||||||||| | | | || ||||||| || |||||| || ||| Sbjct 4438207 ATAGCGATCGGGGATTGCAATTATTTCCCATGAATGAGGAATTCCCAGTAAGTGCTGGTC 4438148 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||||||| | |||||||| ||||||| Sbjct 4438147 ATAAGCTCGCGTTGATAAAGTCCCTGCACTTTGTA 4438113 >seq1 Length=219802468 Score = 95.1 bits (104), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 15/195 (8%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||| || | ||| || ||| | ||||| ||||||||||||||| Sbjct 68034608 GGCTTCTTAGAGGAACAAGTGGC--AACACGA-----GATTGAG-CAATAACAGGTCTGT 68034659 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG------ACAGAG-CCAACGA 182 ||||||||||||||| | |||| ||||||||| ||||||| ||| | || || Sbjct 68034660 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGATACACTGCATGTATCAGTGATCAGCGT 68034719 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || | |||| ||| |||| |||||| | | || | | ||||| | ||||| Sbjct 68034720 GTGTCTACCCTTTGCCAACAGGTGCGGGTAACCCGCTGAACCCCGTTCGTGATAGGGATC 68034779 Query 243 GAGCATTGCAATTAT 257 | ||||||||||||| Sbjct 68034780 GGGCATTGCAATTAT 68034794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946176711424