Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq17 306 1e-80 seq8 244 3e-62 seq20 118 3e-24 seq13 114 4e-23 seq92210 109 2e-21 seq39 95.1 4e-17 seq9 82.4 2e-13 seq12 75.2 4e-11 >seq17 Length=117834370 Score = 306 bits (338), Expect = 1e-80 Identities = 178/184 (97%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 106907534 TCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAA 106907593 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106907594 TTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 106907653 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 106907654 CGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTC 106907713 Query 530 AACA 533 |||| Sbjct 106907714 AACA 106907717 >seq8 Length=121245977 Score = 244 bits (270), Expect = 3e-62 Identities = 203/248 (82%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||||||||| |||| |||| |||| | | ||||||| |||| ||||| Sbjct 23659395 CTCCCATTTATTCTACATCTCTTGAGTCTCTTCATAGTTGCAGACTAGATTCAATCTCAA 23659336 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| | |||| |||| | ||| || ||||||| |||||| |||| Sbjct 23659335 CAGGGTCTTCTTTCCTTGTGTATTCTGCCACGTCCGGTCACTTGGCTATGGTTTTCCTAG 23659276 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| | |||||| || |||||||||| |||||||||||| ||||||||||| ||| Sbjct 23659275 ATAGTAGGTGGGGACAATGTGAATCTCGTTCATCCATTCATGCATGTCACTAATTACATG 23659216 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || |||| ||||||||||||| |||| ||||||||||| | || ||||||||| |||| Sbjct 23659215 ACAAGGCTTTTGGCTACCTTAGGAGATTCATAGTTACTGCTGCTGTTTACCCGTGCTTCA 23659156 Query 477 TTGAATTT 484 |||||||| Sbjct 23659155 TTGAATTT 23659148 >seq20 Length=8165045 Score = 118 bits (130), Expect = 3e-24 Identities = 226/329 (69%), Gaps = 33/329 (10%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||| || |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 1493715 CTTCTGCTTCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1493774 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| || || || Sbjct 1493775 GTTTGACAGGTGTCCCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCTCGGAGCGTGTC 1493834 Query 127 -GGCCC----GCGAAGGAC-----CTTAACGCCAGAA--AATGGTCGGTGAAGACCAGTT 174 |||| ||| || | ||| ||| || | | | | | | | Sbjct 1493835 ACGCCCCGGTGCGGGGGCCGGGCGCTTGGGTCCATAAGCGAGAGCCCCTCGGGGCTCGCC 1493894 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC---TTGCGC--- 228 || | ||| ||||| |||||||||||| ||||||||||||||| | |||| Sbjct 1493895 CCACCTCACCAGGTAAGTGAAAAAACGATAACAGTAGTGGTATTTCACCGGTGGCGCCCC 1493954 Query 229 ----CGA--AAC------GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 ||| | | | ||||||||||| |||||||||||| ||| |||||| Sbjct 1493955 TTTGCGATGAGCGCGGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTG 1494014 Query 277 CGGACTAGAGTCAAGCTCAA---CAGGGT 302 | ||||||||| |||||||| |||||| Sbjct 1494015 CAGACTAGAGTAAAGCTCAAGGGCAGGGT 1494043 >seq13 Length=126821045 Score = 114 bits (126), Expect = 4e-23 Identities = 88/102 (86%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 435 TTAAGAGAGTCA--TAGTTACTCCCGCCGTTTACCCGCGCTTGG-TTGAATTTCTTCACT 491 |||||||||||| ||||||||||| | | |||||| ||| |||||||||||||| Sbjct 83753286 TTAAGAGAGTCACATAGTTACTCCCACTGCTTACCCAGTCTTCCATTGAATTTCTTCACC 83753345 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| ||||||||| |||||| Sbjct 83753346 TTGACATTCAGAGCACTGGGCAGAATTCACATTGCATCAACA 83753387 >seq92210 Length=228 Score = 109 bits (120), Expect = 2e-21 Identities = 93/115 (81%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| ||||||| |||| |||| | ||||||||||||||||||| |||| |||| ||| Sbjct 226 GGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGT 167 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCG 134 ||||||||| ||||||||||||||| || |||| |||||| ||| |||| Sbjct 166 ACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGCGGGTCGCG 117 >seq39 Length=1807405 Score = 95.1 bits (104), Expect = 4e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 || |||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 ACCAGAGAAAACCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 1187 Query 340 GG 341 || Sbjct 1186 GG 1185 >seq9 Length=159361991 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 || |||||||| |||||||||| || |||||| ||| || | || ||||| ||| ||| Sbjct 71044592 AGATCAACAGG-TCTTCTTTCCTCGTTGATTCTACCATGCTC-TTTTCTTGGTTGTAGTT 71044535 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 | |||| ||||||| |||| ||||||| |||||| || Sbjct 71044534 TAGCTATATAGTAGGTAGGAACAGTGGAAATCTCTTT 71044498 Score = 80.6 bits (88), Expect = 9e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 || |||||||| |||||||||| | |||||| |||| || | || |||||| ||| ||| Sbjct 71044790 AGATCAACAGG-TCTTCTTTCCTTGTTGATTCTGCCATGCTC-TTTCCTTGGTTGTAGTT 71044733 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 || ||| | || || ||| ||||||| |||||| || ||||| Sbjct 71044732 TCACTACACAGCAGGTAGAAACAGTGGAAATCTCTTTCATCCA 71044690 >seq12 Length=128359586 Score = 75.2 bits (82), Expect = 4e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||||| ||||| || | ||| | ||||||||||| || ||||| ||| ||| ||| Sbjct 127104200 GGAGATATCTGTCCTGCTGGAGCTCATCTTAGGACACCAGCATTATGATTTGTCAGGTGT 127104259 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | ||||||| ||||||||||||||| | |||| Sbjct 127104260 ACTGCCCCAGTCAAACTCCCCACCTGCAACTGTC 127104293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633433444384