Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq16 100 5e-19 seq13 80.6 4e-13 seq11 80.6 4e-13 seq1 80.6 4e-13 >seq16 Length=98932710 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||||| | || | || |||| || || | Sbjct 66828516 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 66828459 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||| | ||||||||| Sbjct 66828458 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTTAATCAGAATCC 66828405 >seq13 Length=126821045 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 19609743 CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTC 19609684 Query 108 AGAATCC 114 ||||||| Sbjct 19609683 AGAATCC 19609677 >seq11 Length=155008753 Score = 80.6 bits (88), Expect = 4e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 53 CAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 ||| || || |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 15540919 CAGCCAATGGAGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 15540860 Query 113 CC 114 || Sbjct 15540859 CC 15540858 >seq1 Length=219802468 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/112 (77%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||||| | |||||| ||| | || | || |||| || || || Sbjct 146345558 ACGAGAGGAACCGCAGG-TTCAGACA----GGTGTATGTGCTTGGCTGAGGAGCCAATGG 146345612 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||| || |||||| |||||||| |||||||||||||||||||||||| Sbjct 146345613 GGCGAAGATAACATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 146345664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818342650112