Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq12 86.0 5e-12 seq4 86.0 5e-12 >seq3 Length=181146889 Score = 147 bits (162), Expect = 2e-30 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| || |||||||| |||||||| |||||||||| ||||| || Sbjct 172430372 GGTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTG 172430313 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| |||||||| ||||| ||||||||||||| ||||||||||||||| |||||| || Sbjct 172430312 ATTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTG 172430253 Query 66169 GGACTCAATGATGGCGTGCCA 66189 ||||| || ||||| ||||| Sbjct 172430252 CGACTCTATAATGGCATGCCA 172430232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 |||||||| |||||| |||||||||||||| | ||| ||||| ||||| | |||| Sbjct 172428929 TCTACACGTTTCATAAAGAGATCAGGTATCCACATGGCATAGAATAGATCCCTGGCTCTC 172428870 Query 66389 TGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 |||||||| | || ||| || || | ||| ||||| ||||| | || |||||| Sbjct 172428869 TGCTCCTCCTTTCCAGTG-TTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCA 172428811 Query 66448 TGGTTCCAGGTAGATGGCGAA 66468 |||||||| || ||||| || Sbjct 172428810 CGGTTCCAGATATATGGCAAA 172428790 >seq12 Length=128359586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||||| | || || || || || || |||||||||| Sbjct 109019862 TGGAGCGATTCAGTCAGGAGGTGCAAGTCCCAGAAGCTCGCTGCTTTTATGGCTTCCAGA 109019803 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||| ||||| || || || ||||||||||| | ||||| || || ||||| Sbjct 109019802 TTCTCATAGAGAACGTTCATTCTGAGATGTACAGCCTGCTCATAGAGACCTACAT 109019748 >seq4 Length=159726490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 |||||||| |||||| ||||| |||||||| | ||| ||||| ||||| | |||| Sbjct 158380754 TCTACACGTTTCATAAAGAGATCCGGTATCCACATGGCATAGAATAGATCCCTGGCTCTC 158380813 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 |||||||| | || ||| || | ||| ||||| ||||| | || |||||| Sbjct 158380814 TGCTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAA 158380873 Query 66449 GGTTCCAGGTAGATGGCGAA 66468 ||||||||||| ||||| || Sbjct 158380874 GGTTCCAGGTATATGGCAAA 158380893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397044541223120