Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq173 185 1e-44 seq7 168 1e-39 >seq173 Length=227986 Score = 185 bits (204), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 225677 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 225734 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 225735 CTCGTTCATGGGAAATAATTGCAATCCCCGATCCCTATCACGAACGGGGTTCAACGGGTT 225794 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 225795 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 225854 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 225855 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 225892 Score = 181 bits (200), Expect = 2e-43 Identities = 173/218 (79%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||| ||| Sbjct 92247 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGA--TTC 92303 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 92304 CTCGTTCATGGGAAATAATTGCAATCCCCGATCCCTATCACGAACGGGGTTCAACGGGTT 92363 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 92364 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 92423 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 92424 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 92461 Score = 174 bits (192), Expect = 2e-41 Identities = 171/217 (79%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||||| | Sbjct 77628 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAAT--C 77684 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | || ||||||| | | ||||| ||||||| |||| | ||| Sbjct 77685 CTCGTTCATGGGAAATAATTGCA-TCCCCGATCCCTATCACGAACGGGGTTCACGGGTTA 77743 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||||||||| ||| | | || || ||| |||||||||||||||||| | Sbjct 77744 CCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCAG 77803 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||||||||||||||||||||||||||||||| Sbjct 77804 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 77840 >seq7 Length=117177943 Score = 168 bits (186), Expect = 1e-39 Identities = 171/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 88496782 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 88496725 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||| ||||||| ||||| | || Sbjct 88496724 CTCGTTCATGGGAAATAATTGCAATCCCC---CCCTATCACGAACGGGGTTCAACGGGTT 88496668 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 88496667 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 88496608 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||| ||||||||||||||||| Sbjct 88496607 GCCCCGGACATCTAAGGGCAACACAGACCTGTTATTGC 88496570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751950301730