Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq173 185 1e-44
seq7 168 1e-39
>seq173
Length=227986
Score = 185 bits (204), Expect = 1e-44
Identities = 174/218 (80%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 225677 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 225734
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||| ||||||| ||||| | ||
Sbjct 225735 CTCGTTCATGGGAAATAATTGCAATCCCCGATCCCTATCACGAACGGGGTTCAACGGGTT 225794
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 225795 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 225854
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | |||||||||||||||||||||||||||||||
Sbjct 225855 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 225892
Score = 181 bits (200), Expect = 2e-43
Identities = 173/218 (79%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||| |||
Sbjct 92247 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGA--TTC 92303
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||| ||||||| ||||| | ||
Sbjct 92304 CTCGTTCATGGGAAATAATTGCAATCCCCGATCCCTATCACGAACGGGGTTCAACGGGTT 92363
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 92364 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 92423
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | |||||||||||||||||||||||||||||||
Sbjct 92424 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 92461
Score = 174 bits (192), Expect = 2e-41
Identities = 171/217 (79%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||||| |
Sbjct 77628 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAAT--C 77684
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| | | || ||||||| | | ||||| ||||||| |||| | |||
Sbjct 77685 CTCGTTCATGGGAAATAATTGCA-TCCCCGATCCCTATCACGAACGGGGTTCACGGGTTA 77743
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|||| |||||||||| ||| | | || || ||| |||||||||||||||||| |
Sbjct 77744 CCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCAG 77803
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||| | |||||||||||||||||||||||||||||||
Sbjct 77804 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 77840
>seq7
Length=117177943
Score = 168 bits (186), Expect = 1e-39
Identities = 171/218 (78%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 88496782 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 88496725
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||| ||||||| ||||| | ||
Sbjct 88496724 CTCGTTCATGGGAAATAATTGCAATCCCC---CCCTATCACGAACGGGGTTCAACGGGTT 88496668
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 88496667 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCA 88496608
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | ||||||||||||| |||||||||||||||||
Sbjct 88496607 GCCCCGGACATCTAAGGGCAACACAGACCTGTTATTGC 88496570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751950301730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |